Python package to work with bruker tdf and tdf_bin files
Project description
TDFpy
basic pip package to handle Bruker's .tdf and .tdfbin files.
How to install
- pip install tdfpy
or
- git clone https://github.com/pgarrett-scripps/tdfpy.git
- cd tdfpy
- pip install .
How to access analysis.tdf db
- from tdfpy import PandasTdf
- pd_tdf = PandasTdf('path/to/analysis.tdf')
- pd_tdf.precursors -> returns pd.DataFrame containing Precursors table
- pd_tdf.frames -> returns pd.DataFrame containing Frames table
- pd_tdf.properties -> returns pd.DataFrame containing Properties table
How to access analysis.tdf_bin db
- from tdfpy import TimsData
- td = TimsData('path/to/dfolder')
- td.readPasefMsMsForFrame(1) -> return msms spectra for first msms frame
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