Utilities for Tellurium
Additional Utilities for Tellurium that we have found useful in our work
This repo includes a number of useful utilities for Tellurium users. These include:
You can install teUtils using pip:
pip install teUtils
The documentation can be found at: http://teUtils.readthedocs.io/en/latest/
This modules provides two methods to build a linear chain of reactions using either mass-action or Michaelis-Menten kinetics or a random network using uniuni, unibi, biuni or bibi mass-action governed reactions.
This provides a number of methods to convert SBML into the equations representing the model.
This modules contains a variety of additional plotting methods, include 3D, heatmaps for control coefficients, ascii plots, phase plots and more.
This modules provides two methods to display fluxes and concentrations in a neat tabular format using jsut ascii characters.
File utilties that simply some operation whch for some reason are not available in Python
This package only has one method currently which is a single method to make time course parameter scanning easier
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