Threads
This software implements the Threads algorithm, described in
Á. F. Gunnarsson, J. Zhu, B. C. Zhang, Z. Tsangalidou, A. Allmont, P. Palamara. A scalable approach for genome-wide inference of ancestral recombination graphs. bioRxiv, 2024.
The user manual for threads can be found here.
Installation
pip install threads_arg
threads Release Notes
[0.2.1] - 2025-06-03
Added
- VCF conversion backwards compatibility (#76)
- Add Linux ARM platform to Python wheels (#82)
[0.2.0] - 2025-04-29
Added
- Optimised imputation (#28)
- Variant mapping (#38)
- Upgrade to numpy 2.0 (#39)
- Consistent SHAPEIT format for regions (#42)
- Ability to write impute output directly to stdout (#42)
- Allele age estimation and data consistency (#51)
Fixed
- Fix os.sched_getaffinity macOS error (#49)
[0.1.0] - 2024-07-04
Added
- Initial version of threads
2 maintainers
Metadata
2 maintainers
Release files for threads-arg 0.2.1
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Built distributions (wheels)
Total release size: 6.9 MB
Release files / threads_arg-0.2.1-cp313-cp313-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl
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Release files / threads_arg-0.2.1-cp313-cp313-manylinux_2_27_aarch64.manylinux_2_28_aarch64.whl
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Release files / threads_arg-0.2.1-cp313-cp313-macosx_11_0_arm64.whl
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Release files / threads_arg-0.2.1-cp313-cp313-macosx_10_15_x86_64.whl
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Release files / threads_arg-0.2.1-cp312-cp312-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl
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Release files / threads_arg-0.2.1-cp312-cp312-manylinux_2_27_aarch64.manylinux_2_28_aarch64.whl
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