threedidepth 0.7.0

Calculate waterdepths for 3Di results.

threedidepth

Waterdepth

Calculate waterdepths for 3Di results. For results of type ‘raw’ the variable ‘s1’ is used as waterlevel. For results of type ‘aggregate’, the variable ‘s1_max’ is used as waterlevel.

Concentrations

Calculate concentrations for 3Di water quality results.

Features

• Interpolated or gridcell-constant waterlevels or concentrations

• Interfaces with threediresults via threedigrid

• Progress indicator support

• Low memory consumption

For the interpolated mode, the ‘lizard’-method is used. For a detailed description, read the docstring for the LizardLevelCalculator.

For the maximum waterlevel calculation, the maximum waterlevel for each point is taken before the interpolation is applied. This can lead to situations where the highest waterlevel for a pixel for a certain timestep is higher than the maximum waterlevel for the pixel.

Installation

Make sure GDAL is available as (from osgeo import gdal)

$ pip install threedidepth

Usage

From the cli:

$ threedidepth gridadmin.h5 results_3di.nc dem.tif waterdepth.tif
$ threediwq gridadmin.h5 water_quality_results_3di.nc substance1 <xmin ymin xmax ymax> concentration.tif

Or python:

>>> threedidepth.calculate_waterdepth(...)
>>> threedidepth.calculate_water_quality(...)

Development installation with Docker Compose

For development, clone the repository and use a docker compose setup:

$ docker compose build --build-arg uid=`id -u` --build-arg gid=`id -g` lib
$ docker compose up --no-start
$ docker compose start
$ docker compose exec lib bash

Create a virtualenv:

# note that Dockerfile prepends .venv/bin to $PATH
(docker)$ python3 -m venv .venv --system-site-packages

Install dependencies & package and run tests:

(docker)$ pip install -r requirements.txt
(docker)$ pip install -e .[test]
(docker)$ pytest

Update packages:

(docker)$ rm -rf .venv
(docker)$ python3 -m venv .venv --system-site-packages
(docker)$ pip install -e .
(docker)$ pip freeze | grep -v threedidepth > requirements.txt

Changelog of threedidepth

0.7.0 (2025-09-23)

• Add support for water quality results.

0.6.3 (2024-03-22)

• Fix no_data_value is undefined.

0.6.2 (2024-03-14)

• Assign a default value if no_data_value is undefined.

0.6.1 (2023-07-11)

• Add release action for automatic upload to GitHub and PyPI.

0.6.0 (2023-07-10)

• Update dependency versions

• Add support for calculating maximum waterlevel as well as per timestep.

0.5 (2021-07-02)

• Added support for result type ‘aggregate’.

• Got rid of NetCDF4 dependency by using h5netcdf.

• Fix coordinates of NetCDF output. (#17)

0.4 (2021-03-23)

• Enabled multiple calculation steps.

• Added netCDF output option.

0.3 (2021-02-10)

• Reorder to match the lizard triangulation.

0.2 (2020-12-10)

• Implemented lizard method and set it as default.

0.1.2 (2020-09-21)

• Fix off-by-one-pixel nodgrid.

0.1.1 (2020-09-11)

• Fix flipped nodgrid.

0.1 (2020-09-03)

• First version.