tif_to_zarr 0.3

Simple package to convert small tif files to zarr format.

This script could be used for conversion of a .tiff file to .zarr format with OME-NGFF multiscales metadata structure.

How to run

1. open command line terminal
2. install poetry tool for dependency management and packaging: https://pypi.org/project/poetry/
3. switch to the tif_to_zarr directory: cd PATH_TO_DIRECTORY/tif_to_zarr
4. install python dependencies: poetry install
5. run script using cli: poetry run python src/tif_to_zarr.py --src=PATH_TO_SOURCE_DIRECTORY/input_file.tif --dest=PATH_TO_DEST_DIRECTORY/output_file.zarr
6. to convert a tiff file to zarr with custom metadata values, you can run smthg similar to this: poetry run python3 src/tif_to_zarr.py --src=path_to_source_tif --dest=path_to_output_zarr -a x z y -t 1.0 2.0 3.0 -s 4.0 5.0 6.0 -u nanometer nanometer nanometer
7. To get the list of options, you may run this: poetry run python3 src/tif_to_zarr.py --help