Simple package to convert small tif files to zarr format.
Project description
This script could be used for conversion of a .tiff file to .zarr format with OME-NGFF multiscales metadata structure.
How to run
- open command line terminal
- install poetry tool for dependency management and packaging: https://pypi.org/project/poetry/
- switch to the tif_to_zarr directory:
cd PATH_TO_DIRECTORY/tif_to_zarr
- install python dependencies:
poetry install
- run script using cli:
poetry run python src/tif_to_zarr.py --src=PATH_TO_SOURCE_DIRECTORY/input_file.tif --dest=PATH_TO_DEST_DIRECTORY/output_file.zarr
- to convert a tiff file to zarr with custom metadata values, you can run smthg similar to this:
poetry run python3 src/tif_to_zarr.py --src=path_to_source_tif --dest=path_to_output_zarr -a x z y -t 1.0 2.0 3.0 -s 4.0 5.0 6.0 -u nanometer nanometer nanometer
- To get the list of options, you may run this:
poetry run python3 src/tif_to_zarr.py --help
Project details
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
tif_to_zarr-0.4.tar.gz
(2.8 kB
view hashes)
Built Distribution
Close
Hashes for tif_to_zarr-0.4-py3-none-any.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | cd4c06f5fab809039994b05acfd4063bcaedd6d0098a143e575b7c8aedfeda87 |
|
MD5 | 7f173172394e6a3f65cfacca9883eb3e |
|
BLAKE2b-256 | d11c3a70b6de7476c202a7a2d81fc467279d98db2be0cb0939d89772b11881e5 |