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Project description

Tike is a toolbox for tomographic reconstruction of 3D objects from ptychography data.

The aim of Tike is to provide fast and accurate implementations of a wide variety of reconstruction algorithms, and to provide a common platform for the synchrotron research community.

Current Features (March 2021)

Scan

  • Lissajous and 2D spiral trajectories

  • hexagonal and rectangular grids

Ptychography

  • FFT-based operator with linear position interpolation

  • single-energy

  • multiple probes per diffraction pattern (multi-mode probes)

  • probe variation correction (eigen probes)

  • one shared (multi-modal) probe per angular view

  • multi-GPU conjugate-gradient descent solver

  • multi-GPU least-squares + gradient descent solver

Laminography

  • USFFT-based operator for cubic field-of-view

  • single tilt angle

  • multi-GPU conjugate-gradient descent solver

Alignment

  • Lanczos-based rotation and flow operators

  • Cross-correlation rigid alignment solver

Citations

This software has a DOI for use in citations.

Gursoy, Doga, and Ching, Daniel J. “Tike.” Computer software. December 01, 2022. https://github.com/AdvancedPhotonSource/tike.git. https://doi.org/10.11578/dc.20230202.1.

Copyright (c) 2018, UChicago Argonne, LLC. All rights reserved.

Copyright 2018. UChicago Argonne, LLC. This software was produced under U.S. Government contract DE-AC02-06CH11357 for Argonne National Laboratory (ANL), which is operated by UChicago Argonne, LLC for the U.S. Department of Energy. The U.S. Government has rights to use, reproduce, and distribute this software. NEITHER THE GOVERNMENT NOR UChicago Argonne, LLC MAKES ANY WARRANTY, EXPRESS OR IMPLIED, OR ASSUMES ANY LIABILITY FOR THE USE OF THIS SOFTWARE. If software is modified to produce derivative works, such modified software should be clearly marked, so as not to confuse it with the version available from ANL.

Additionally, redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:

  • Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer.

  • Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.

  • Neither the name of UChicago Argonne, LLC, Argonne National Laboratory, ANL, the U.S. Government, nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission.

THIS SOFTWARE IS PROVIDED BY UChicago Argonne, LLC AND CONTRIBUTORS “AS IS” AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL UChicago Argonne, LLC OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

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