time-interpret 0.1.0

Time interpret library for PyTorch.

Time Interpret (tint)

This package expands the captum library with a specific focus on time series. Please see the documentation and examples for more details.

Install

Time Interpret can be installed with pip:

pip install time_interpret

or from source with conda:

git clone [e-mail]:babylonhealth/time_interpret.git
cd time_interpret
conda env create
source activate tint
pip install --no-deps -e .

Quick-start

First, let's load an Arma dataset:

from tint.datasets import Arma

arma = Arma()
arma.download()  # This method generates the dataset

We then load some test data from the dataset and the corresponding true saliency:

x = arma.preprocess()["x"][0]
true_saliency = arma.true_saliency(dim=rare_dim)[0]

We can now load an attribution method and use it to compute the saliency:

from tint.attr import TemporalIntegratedGradients

explainer = TemporalIntegratedGradients(arma.get_white_box)

baseline = inputs * 0
attr = explainer.attribute(
    inputs,
    baselines=inputs * 0,
    additional_forward_args=(true_saliency,),
    temporal_additional_forward_args=(True,),
).abs()

Finally, we evaluate our method using the true saliency and a white box metric:

from tint.metrics.white_box import aup

print(f"{aup(attr, true_saliency):.4})

Methods (under development)

• AugmentedOcclusion
• BayesLime
• BayesShap
• DynaMask
• Discretised Integrated Gradients
• Fit
• Occlusion
• Retain
• SmoothGrad

Acknowledgment

• Jonathan Crabbe for the DynaMask implementation.
• Sana Tonekaboni for the fit implementation.
• INK Lab for the discretized integrated gradients implementation.