Common code for the Lenstra lab.
Project description
Common Code
Code that both LiveCellAnalysis and smFISH (or others) use and doesn't get major changes goes here. This code should be a submodule in smFISH and LiveCellAnalysis.
Command line tools:
wimread
wimread imagefile
Displays information (pixel size, interval time etc.) about the image file.
Installation (Ubuntu)
python-javabridge is required, which requires java, for ubuntu:
sudo apt install openjdk-8-jdk-headless
Set java 8 as default java:
sudo update-alternatives --config java
Then this code can be installed as a package:
pip install tllab_common
or editable:
git clone git@github.com:Lenstralab/tllab_common.git
pip install -e tllab_common/ --user
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
tllab_common-2024.3.2.tar.gz
(46.4 kB
view hashes)
Built Distribution
Close
Hashes for tllab_common-2024.3.2-py3-none-any.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 30514e05f58972b02edb9d66f77c37f84027b758660c0096c0a85a5f6b193780 |
|
MD5 | 1e0e6a8295a3da5786be2d26476f52e2 |
|
BLAKE2b-256 | 4088ad867c3bca0f1aac1add0eae934a7f9e789827d876f9a3944a93c5bd3a9d |