tomwer 1.3.16

"tomography workflow tools"

tomwer is offering tools to automate acquisition and reconstruction processes for Tomography. It contains:

• a library to access each acquisition process individually

• gui and applications to control main processes (reconstruction, data transfert…) and execute them as a stand alone application.

• an orange add-on to help users defining their own workflow (http://orange.biolab.si)

Documentation

Latest documentation

Installation

Step 1 - tomwer

To install it with all ‘features’:

pip install tomwer[full]

alternatively you can install the master branch from

pip install git+https://gitlab.esrf.fr/tomotools/tomwer/#egg=tomwer[full]

Step 2 - update orange-canvas-core and orange-widget-base (Optional)

To access ‘processing’ wheels and ‘reprocess action’ you might want to install forks of update orange-canvas-core and orange-widget-base. This is optional and projects works with native orange projects

pip install git+https://github.com/payno/orange-canvas-core --no-deps --upgrade
pip install git+https://github.com/payno/orange-widget-base --no-deps --upgrade

Launching applications

After the installation tomwer is embedding several applications.

Those applications can be launched by calling:

tomwer appName {options}

Note

if you only call tomwer then the man page will be displayed.

Note

You can access each application help using ``

tomwer appName --help

tomwer canvas - orange canvas

You can launch the canvas to create workflows from the different ‘bricks’

tomwer canvas

Note

you can also use orange-canvas

Note

if your installed a virtual environment do not forget to active it :

source myvirtualenv/bin/activate

Documentation

sphinx-build doc build/html

The documentation is build in doc/build/html and the entry point is index.html

firefox build/html/index.html

Note

the build of the documentation need sphinx to be installed. This is not an hard dependacy. So you might need to install it.