topacedo
Project description
# TopACeDo #### Topology Assisted Cell Downsampling
Topacedo works with Scarf to perform memory efficient downsampling of single-cell genomics data. Using a pre-built neighbourhood graph of cells, Topacedo aims to sample cells from the graph such that the manifold is preserved. Topecedo’s algorithm can be diveded into two phases:
assigning prizes to cells and penalties to edges
running a fast approximate prize-collecting steiner tree
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
topacedo-0.2.10.tar.gz
(10.8 kB
view hashes)
Built Distribution
topacedo-0.2.10-py3-none-any.whl
(11.5 kB
view hashes)
Close
Hashes for topacedo-0.2.10-py3-none-any.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 6a1131b13a105717715ec88791e8688a0a10f660ada622bcf6ced101b5701009 |
|
MD5 | 55d917706cb9b80e82b9779fa43e67c9 |
|
BLAKE2b-256 | 57e0cbe7b82090282888bdfa3c22c6b141e926c86a2c3310779754c59ed0f0af |