Skip to main content

DSSAT input and output file reader and writer

Project description

traDSSAT

TraDSSAT is a library to easily read and write DSSAT input and output files.

Status

Client Python codecov Documentation Status

Installation

poetry add tradssat or pip install tradssat

Full docs

Read the full thing here.

Citation

If you use traDSSAT, please consider citing this repository until we write a real publication about traDSSAT.

Quick examples

Parse and edit any DSSAT file directly:

from tradssat import SoilFile, WTHFile, ExpFile, set_dssat_dir
from tradssat import GeneticMgr, CULFile, ECOFile

# Read, edit and write soil files
soil = SoilFile('path/to/my/file.SOL')

# Read and write weather files as well
wth = WTHFile('path/to/my/WTHR0001.WTH')

# ...and experiment files!
exp = ExpFile('path/to/my/experiment.EXP')


# Access genetic coefficients by cultivar file or ecotype file
cul = CULFile('path/to/my/MZIXM.CUL')
eco = ECOFile('path/to/my/MZIXM.ECO')

cul.get_value('P1')  # returns array of all varieties' P1
eco.get_value('TOPT')  # returns array of all ecotypes' TOPT

# ...or automagically!
set_dssat_dir('C:/DSSAT47')
gen = GeneticMgr(crop='MZIXM', cult='PC0001')
gen.get_value('P1')  # Returns P1 for MZIXM cultivar PC0001
gen.get_value('TOPT')  # Returns ecotype variable TOPT for cultivar PC0001

Read, edit and write experiments, with automatic access to referenced external soil, genetic and weather files:

from tradssat import DSSATRun

run = DSSATRun('path/to/my/experiment.EXP')
run.get_trt_val('INGENO', trt=1)  # Get cultivar for treatment 1
run.set_trt_factor_level(trt=1, factor='CULTIVARS', level=2)  # Change level of treatment factor
run.set_factor_level_val('INGENO', 'IB0067', level=1)  # Change value of a factor level (in this case cultivar type)

Access output from a run:

from tradssat import DSSATResults

out = DSSATResults('path/to/my/output/dir')
out.get_value('FWAD', trt=1)

# Get results at specific time (day of year, days after planting or days after start)
out.get_value('FWAD', trt=1, t=13, at='DAS')  # Get result at 13 days after start
out.get_value('FWAD', trt=1, t=13, at='DAP')  # Get result at 13 days after planting
out.get_value('FWAD', trt=1, t='1989 123', at='DOY')  # Get result at 123th day of year 1989

Contributing

Don't forget to add your name to the authors list in the docs/source/acknow.rst file!

Licensing

MIT License

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

tradssat-0.1.10.tar.gz (4.2 MB view hashes)

Uploaded source

Built Distribution

tradssat-0.1.10-py3-none-any.whl (78.9 kB view hashes)

Uploaded py3

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page