Detect and evaluate tandem repeats in genomic sequence data.
Project description
# Tandem Repeat Annotation Library
TRAL is a highly modularized, flexible sequence tandem repeats annotation Python2/3 library.
- Large scale annotation of tandem repeats with de novo detectors, and sequence profile models
- Statistical significance testing, overlap detection, and filtering of annotations
- Refinement of tandem repeat annotations with circular profile hidden Markov models
- User-defined output formats
The source code is [documented on GitHub IO].
### Version 0.3.0
### Installation
TRAL is available on [Pypi] and can be installed with [pip] for Python>2.7 and Python>3.2:
`sh $ pip install tral `
### License
GNU
[documented on GitHub IO]:http://elkeschaper.github.io/tral/ [Pypi]:https://pypi.python.org/pypi [pip]:https://pip.pypa.io/en/latest/
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