Skip to main content

Detect and evaluate tandem repeats in genomic sequence data.

Project description

TRAL is a highly modularized, flexible sequence tandem repeats annotation Python2/3 library.

  • Large scale annotation of tandem repeats with de novo detectors, and sequence profile models
  • Statistical significance testing, overlap detection, and filtering of annotations
  • Refinement of tandem repeat annotations with circular profile hidden Markov models
  • User-defined output formats

The source code is documented on GitHub IO.




TRAL is available on Pypi and can be installed with pip for Python>3.2:

$ pip install tral

See also more extensive Installation instructions.



Project details

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Files for tral, version 0.3.2
Filename, size File type Python version Upload date Hashes
Filename, size tral-0.3.2.tar.gz (319.1 kB) File type Source Python version None Upload date Hashes View

Supported by

Pingdom Pingdom Monitoring Google Google Object Storage and Download Analytics Sentry Sentry Error logging AWS AWS Cloud computing DataDog DataDog Monitoring Fastly Fastly CDN DigiCert DigiCert EV certificate StatusPage StatusPage Status page