Detect and evaluate tandem repeats in genomic sequence data.
Project description
TRAL is a highly modularized, flexible sequence tandem repeats annotation Python2/3 library.
- Large scale annotation of tandem repeats with de novo detectors, and sequence profile models
- Statistical significance testing, overlap detection, and filtering of annotations
- Refinement of tandem repeat annotations with circular profile hidden Markov models
- User-defined output formats
The source code is documented on GitHub IO.
Version
0.3.2
Installation
TRAL is available on Pypi and can be installed with pip for Python>3.2:
$ pip install tral
See also more extensive Installation instructions.
License
GNU
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