Minimal Trap Spaces computation using Maximal Siphons
Project description
Trappist is a tool for computing minimal trap spaces of a Boolean model.
Install
You can install trappist with pip
directly from the Package Index:
$ python3 -m pip install trappist
or grab the very latest version from the source:
$ python3 -m pip install -e git+https://github.com/soli/trap-spaces-as-siphons.git
You will also need the clingo
ASP solver in your PATH for the asp
method of computing the trap spaces (default). Instructions are provided directly on the Potassco pages.
Note that Trappist does install the PySAT module so that the sat
method is always available even if you do not have clingo
.
Run trappist in a Binder image
Latest version, with 2022-12-01 colomoto-docker image:
Read about trappist
The article describing trappist is here
Run trappist from the command line
After installing trappist
(and maybe clingo
), just run
$ trappist [-m maximum number of solutions] [-t maximum time to use in seconds] [-s solver (asp|sat)] <PNML input file>
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