TreeSwift: Fast tree module for Python 2 and 3
Project description
# TreeSwift [![Build Status](https://travis-ci.org/niemasd/TreeSwift.svg?branch=master)](https://travis-ci.org/niemasd/TreeSwift)
TreeSwift is a Python library for parsing, manipulating, and iterating over (rooted) tree structures. TreeSwift places an emphasis on speed.
## Installation
TreeSwift can be installed using `pip`:
```bash
sudo pip install treeswift
```
If you are using a machine on which you lack administrative powers, TreeSwift can be installed locally using `pip`:
```bash
pip install --user treeswift
```
## Usage
Typical usage should be as follows:
1. Import the `treeswift` package
2. Use `treeswift.read_tree_newick` to load your Newick tree
3. Use the various `Tree` class functions on the resulting object as you need
```python
import treeswift
tree = treeswift.read_tree_newick(my_newick_string)
for node in tree.traverse_postorder():
print(node)
```
Full documentation can be found at [https://niemasd.github.io/TreeSwift/](https://niemasd.github.io/TreeSwift/), and more examples can be found in the [TreeSwift Wiki](https://github.com/niemasd/TreeSwift/wiki).
TreeSwift is a Python library for parsing, manipulating, and iterating over (rooted) tree structures. TreeSwift places an emphasis on speed.
## Installation
TreeSwift can be installed using `pip`:
```bash
sudo pip install treeswift
```
If you are using a machine on which you lack administrative powers, TreeSwift can be installed locally using `pip`:
```bash
pip install --user treeswift
```
## Usage
Typical usage should be as follows:
1. Import the `treeswift` package
2. Use `treeswift.read_tree_newick` to load your Newick tree
3. Use the various `Tree` class functions on the resulting object as you need
```python
import treeswift
tree = treeswift.read_tree_newick(my_newick_string)
for node in tree.traverse_postorder():
print(node)
```
Full documentation can be found at [https://niemasd.github.io/TreeSwift/](https://niemasd.github.io/TreeSwift/), and more examples can be found in the [TreeSwift Wiki](https://github.com/niemasd/TreeSwift/wiki).
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