TROPPO
Troppo (Tissue-specific RecOnstruction and Phenotype Prediction using Omics data) is a Python package containing methods for tissue specific reconstruction to use with constraint-based models. The main purpose of this package is to provide an open-source framework which is both modular and flexible to be integrated with other packages, such as cobrapy, framed or cameo whose already provide generic data structures to interpret metabolic models.
A (MI)LP solver is required to use most of the present methods. The current methods support optlang, which in turn allow the use of solvers like CPLEX or Gurobi.
- The current methods implemented are:
FastCORE
CORDA
GIMME
(t)INIT
iMAT
- Methods to be implemented later:
MBA
mCADRE
PRIME
Instalation from PyPI (stable releases)
pip install troppo
Instalation from github (latest development release)
pip install git+https://github.com/BioSystemsUM/troppo.git
Credits and License
Developed at the Centre of Biological Engineering, University of Minho
Released under the GNU Public License (version 3.0).
4 maintainers
Metadata
4 maintainers
Release files for troppo 0.0.7
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
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| troppo-0.0.7.tar.gz | 73.3 kB | Without provenance | Details for troppo-0.0.7.tar.gz |
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| File | Interpreter | ABI | Platform | Actions Reset |
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| troppo-0.0.7-py3-none-any.whl | Python 3 | none | any | Details for troppo-0.0.7-py3-none-any.whl |
Total release size: 159.3 kB
Release files / troppo-0.0.7.tar.gz
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| Size | 73.3 kB |
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Release files / troppo-0.0.7-py3-none-any.whl
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| Size | 86.0 kB |
| Tags | Python 3 |
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