tsmoothie 0.1.2

A python library for timeseries smoothing and outlier detection in a vectorized way.

tsmoothie

A python library for timeseries smoothing and outlier detection in a vectorized way.

Overview

tsmoothie computes, in a fast and efficient way, the smoothing of single or multiple timeseries.

The smoothing tecniques available are:

• Exponential Smoothing
• Convolutional Smoothing with various window types (constant, hanning, hamming, bartlett, blackman)
• Polynomial Smoothing
• Spline Smoothing of various kind (linear, cubic, natural cubic)
• Gaussian Smoothing
• Binner Smoothing
• LOWESS
• Kalman Smoothing with customizable components (level, trend, seasonality, long seasonality)

tsmoothie provides the calculation of intervals as result of the smoothing process. This can be useful to identify outliers and anomalies in timeseries.

The interval types available are:

• sigma intervals
• confidence intervals
• predictions intervals
• kalman intervals

The adoption of this type of intervals depends on the smoothing method used.

tsmoothie can also carry out a sliding smoothing approach. This is possible splitting the timeseries into equal sized pieces and smoothing them independently. As always, this functionality is implemented in a vectorized way through the WindowWrapper class.

Media

Blog Posts:

• Timeseries Smoothing for better clustering (cooming soon)
• Timeseries Smoothing for better forecasting (cooming soon)

Installation

pip install tsmoothie

The module depends only on NumPy, SciPy and simdkalman. Python 3.5 or above is supported.

Usage

Below a couple of examples of how tsmoothie works. Full examples are available in the notebooks folder.

# import libraries
import numpy as np
import matplotlib.pyplot as plt
from tsmoothie.utils_func import sim_randomwalk
from tsmoothie.smoother import LowessSmoother

# generate 3 randomwalks of lenght 200
np.random.seed(123)
data = sim_randomwalk(n_series=3, timesteps=200, 
                      process_noise=10, measure_noise=30)

# operate smoothing
smoother = LowessSmoother(smooth_fraction=0.1, iterations=1)
smoother.smooth(data)

# generate intervals
low, up = smoother.get_intervals('prediction_interval')

# plot the smoothed timeseries with intervals
plt.figure(figsize=(18,5))

for i in range(3):

    plt.subplot(1,3,i+1)
    plt.plot(smoother.smooth_data[i], linewidth=3, color='blue')
    plt.plot(smoother.data[i], '.k')
    plt.title(f"timeseries {i+1}"); plt.xlabel('time')

    plt.fill_between(range(len(smoother.data[i])), low[i], up[i], alpha=0.3)

# import libraries
import numpy as np
import matplotlib.pyplot as plt
from tsmoothie.utils_func import sim_seasonal_data
from tsmoothie.smoother import LowessSmoother

# generate 3 periodic timeseries of lenght 300
np.random.seed(123)
data = sim_seasonal_data(n_series=3, timesteps=300, 
                         freq=24, measure_noise=30)

# operate smoothing
smoother = LowessSmoother(smooth_fraction=0.05, iterations=1)
smoother.smooth(data)

# generate intervals
low, up = smoother.get_intervals('prediction_interval')

# plot the smoothed timeseries with intervals
plt.figure(figsize=(18,5))

for i in range(3):

    plt.subplot(1,3,i+1)
    plt.plot(smoother.smooth_data[i], linewidth=3, color='blue')
    plt.plot(smoother.data[i], '.k')
    plt.title(f"timeseries {i+1}"); plt.xlabel('time')

    plt.fill_between(range(len(smoother.data[i])), low[i], up[i], alpha=0.3)

References

• Polynomial, Spline, Gaussian and Binner smoothing are carried out building a regression on custom basis expansions. These implementations are based on the amazing intutions of Matthew Drury available here
• Time Series Modelling with Unobserved Components, Matteo M. Pelagatti