Python TSNE implementation utilizing openmp for performance
This is based on the 10XDev/tsne fork of L.J.P. van der Maaten BH-tSNE implementation.
It has fixes to allow this to run in Python 3 and performance has been significantly increased with OpenMP parallelism. (see: tsne-perf-test)
Note: While Scikit-learn v0.17 has a tsne implementation, this implementation performs significantly faster than scikit-learn's. If you need speed, use this.
Algorithms
Barnes-Hut-SNE
A python (cython) wrapper for Barnes-Hut-SNE aka fast-tsne.
We forked 10XDev's implementation and openmp enabled the code.
Installation
This library has been added to pypi as tsne-mp
pip install tsne-mp
It requires openmp support.
- OSX -
brew install libomp - linux - 'sudo apt-get install libgomp1'
- Windows - Included with Visual Studio C++
Usage
Basic usage:
from tsne import bh_sne
X_2d = bh_sne(X)
Or, the wheels also contain an executable that can be used from the command-line as described in the original project.
Examples
More Information
See Barnes-Hut-SNE (2013), L.J.P. van der Maaten. It is available on arxiv.
2 maintainers
Metadata
2 maintainers
Release files for tsne-mp 0.1.13
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Built distributions (wheels)
Total release size: 1.3 MB
Release files / tsne_mp-0.1.13-cp37-cp37m-win_amd64.whl
| Download URL | tsne_mp-0.1.13-cp37-cp37m-win_amd64.whl |
|---|---|
| Size | 103.8 kB |
| Tags | CPython 3.7 CPython 3.7 pymalloc Windows x86-64 |
|
SHA-256 checksum How to use checksums |
b303d61b0d761f7b3a07fdf3d5519cce4601b48769f7a51c9736dfb6c8521791
|
|
BLAKE2b-256 checksum How to use checksums |
d56605f7cf3b260af22e901fdb8bf3c0d6144259f41cdf05cf2150e500417489
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/1.11.0 pkginfo/1.4.2 requests/2.19.1 setuptools/39.0.1 requests-toolbelt/0.8.0 tqdm/4.24.0 CPython/3.6.6
|
Release files / tsne_mp-0.1.13-cp37-cp37m-manylinux1_x86_64.whl
| Download URL | tsne_mp-0.1.13-cp37-cp37m-manylinux1_x86_64.whl |
|---|---|
| Size | 167.7 kB |
| Tags | CPython 3.7 CPython 3.7 pymalloc Linux glibc 2.5+ x86-64 |
|
SHA-256 checksum How to use checksums |
89f13e23baaaa9b7665152079dfaf1285db041af8883f93235497ecfef976dc7
|
|
BLAKE2b-256 checksum How to use checksums |
68827c45c7d7ec3d02c518a1acce5d694e1ccd4ecff666b923036a82136ac477
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/1.11.0 pkginfo/1.4.2 requests/2.19.1 setuptools/39.2.0 requests-toolbelt/0.8.0 tqdm/4.23.4 CPython/3.7.0
|
Release files / tsne_mp-0.1.13-cp37-cp37m-macosx_10_9_x86_64.whl
| Download URL | tsne_mp-0.1.13-cp37-cp37m-macosx_10_9_x86_64.whl |
|---|---|
| Size | 133.6 kB |
| Tags | CPython 3.7 CPython 3.7 pymalloc macOS 10.9+ x86-64 |
|
SHA-256 checksum How to use checksums |
e66113589e0d32cad761f59900ef84c76fb21c5b0681368d889f613c50bf996c
|
|
BLAKE2b-256 checksum How to use checksums |
91d46ad415128c0c31f57484f7019bdd5b594ffcc667bb43cde708c9eb48b898
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/1.11.0 pkginfo/1.4.2 requests/2.19.1 setuptools/39.2.0 requests-toolbelt/0.8.0 tqdm/4.23.4 CPython/3.7.0
|
Release files / tsne_mp-0.1.13-cp36-cp36m-win_amd64.whl
| Download URL | tsne_mp-0.1.13-cp36-cp36m-win_amd64.whl |
|---|---|
| Size | 104.5 kB |
| Tags | CPython 3.6 CPython 3.6 pymalloc Windows x86-64 |
|
SHA-256 checksum How to use checksums |
f2fdea39424eb5c314e36809c2788f24e63c1650db2416dcf2ee63efaea14d6c
|
|
BLAKE2b-256 checksum How to use checksums |
b98d4f788d45e468ce6771b9bde9b880f369aee876f4e7823c1cf98a317173f7
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/1.11.0 pkginfo/1.4.2 requests/2.19.1 setuptools/39.0.1 requests-toolbelt/0.8.0 tqdm/4.24.0 CPython/3.6.6
|
Release files / tsne_mp-0.1.13-cp36-cp36m-manylinux1_x86_64.whl
| Download URL | tsne_mp-0.1.13-cp36-cp36m-manylinux1_x86_64.whl |
|---|---|
| Size | 167.8 kB |
| Tags | CPython 3.6 CPython 3.6 pymalloc Linux glibc 2.5+ x86-64 |
|
SHA-256 checksum How to use checksums |
93398182d5997fd414c0c79ff516fad59ea2014c684f6dd78361cd032049edb2
|
|
BLAKE2b-256 checksum How to use checksums |
2bbda01f08bb844987e80296059ce6a399f8abecc362753f6abe75fccb5adcf8
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/1.11.0 pkginfo/1.4.2 requests/2.19.1 setuptools/39.2.0 requests-toolbelt/0.8.0 tqdm/4.23.4 CPython/3.7.0
|
Release files / tsne_mp-0.1.13-cp36-cp36m-macosx_10_9_x86_64.whl
| Download URL | tsne_mp-0.1.13-cp36-cp36m-macosx_10_9_x86_64.whl |
|---|---|
| Size | 133.9 kB |
| Tags | CPython 3.6 CPython 3.6 pymalloc macOS 10.9+ x86-64 |
|
SHA-256 checksum How to use checksums |
3f9f203dc49bf2b4149c45e2043c21809d42623f484beacf31273f0f8d05775a
|
|
BLAKE2b-256 checksum How to use checksums |
a089e22e4504b29aaa9018922e0eec1067bce33f94c8b8d1b6c6aa0c918418d0
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/1.11.0 pkginfo/1.4.2 requests/2.19.1 setuptools/39.2.0 requests-toolbelt/0.8.0 tqdm/4.23.4 CPython/3.7.0
|
Release files / tsne_mp-0.1.13-cp35-cp35m-win_amd64.whl
| Download URL | tsne_mp-0.1.13-cp35-cp35m-win_amd64.whl |
|---|---|
| Size | 101.2 kB |
| Tags | CPython 3.5 CPython 3.5 pymalloc Windows x86-64 |
|
SHA-256 checksum How to use checksums |
3ac951045f5a7c6db6932136045ab3135cdc8e7bcece3f2be37cd7754efa72e3
|
|
BLAKE2b-256 checksum How to use checksums |
4be1c5833419ae690fd15a7d434d5d4778e49a3bd8e5f743de0a35f4a1d49ea8
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/1.11.0 pkginfo/1.4.2 requests/2.19.1 setuptools/39.0.1 requests-toolbelt/0.8.0 tqdm/4.24.0 CPython/3.6.6
|
Release files / tsne_mp-0.1.13-cp35-cp35m-manylinux1_x86_64.whl
| Download URL | tsne_mp-0.1.13-cp35-cp35m-manylinux1_x86_64.whl |
|---|---|
| Size | 166.9 kB |
| Tags | CPython 3.5 CPython 3.5 pymalloc Linux glibc 2.5+ x86-64 |
|
SHA-256 checksum How to use checksums |
82b43fd3b60f553502fc8979f5f1d84eedd56c99fbf49b4795661b0fc32259b7
|
|
BLAKE2b-256 checksum How to use checksums |
c4ad373fdd7c437ddf2fbe2f2de79abe19e97079c62ad16fc8e41bf5d1b2aa6a
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/1.11.0 pkginfo/1.4.2 requests/2.19.1 setuptools/39.2.0 requests-toolbelt/0.8.0 tqdm/4.23.4 CPython/3.7.0
|
Release files / tsne_mp-0.1.13-cp35-cp35m-macosx_10_6_intel.whl
| Download URL | tsne_mp-0.1.13-cp35-cp35m-macosx_10_6_intel.whl |
|---|---|
| Size | 242.3 kB |
| Tags | CPython 3.5 CPython 3.5 pymalloc macOS 10.6+ Intel (x86-64, i386) |
|
SHA-256 checksum How to use checksums |
90bfde9aa987641f00c5572300928fd51d603cef45f5c66365fb385abc42239a
|
|
BLAKE2b-256 checksum How to use checksums |
fb38a82ff23115513c71a34aa733b10a8631d9ab0f80574c847b5c6c13f25462
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/1.11.0 pkginfo/1.4.2 requests/2.19.1 setuptools/39.2.0 requests-toolbelt/0.8.0 tqdm/4.23.4 CPython/3.7.0
|
Security for tsne-mp 0.1.13
Provenance
Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.
No provenance found
None of the files in this release were uploaded with provenance metadata.
A note on package security
PyPI is a repository for distributing packages, not a service for auditing them. While third-party security researchers and our staff do their best to detect and remove malicious packages, PyPI cannot guarantee the quality, security or suitability of any given package.
To learn more about protecting yourself from malicious actors, visit our package security documentation.
