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Making permafrost data effortless

Project description

Teaspoon

See the full documentation on the ReadTheDocs Pages

What is it?

tsp ('teaspoon') is a python library designed to make working with permafrost ground temperature time series data more straightforward, efficient, and reproduceable. Some of the features include:

  • Read a variety of common published data formats, datalogger outputs, and model results into a common data structure
    • GEOtop model output
    • GTN-P database export csv
    • NTGS ground temperature report csv
    • Geoprecision datalogger export
    • HoboWare datalogger export
  • Export data in a variety of common formats
    • TSP-recommended csv format
    • netcdf
    • 'GTN-P'-style csv
    • 'NTGS'-style csv
  • Perform common data transformations
    • Calculate daily, monthly, or yearly means, ignoring averaging periods with missing data
    • Switch between "long" and "wide" dataframes
  • Visualize and explore your data with commonly used plots
    • Trumpet curves
    • Temperature-time graphs
    • Colour-contour profiles

Installation

Usage Examples

How to contribute

Data Standard

TSP also defines a recommended csv format for ground temperature data (which can also be extended to many other kinds of permafrost data). It is described in the DATA_STANDARD.md file in this directory. Files can be read (using the TSP.to_csv method) and written (using read_tsp) using the teaspoon software package.

Citation

If you find this software helpful, please consider using the following citation:

Brown, N., (2022). tsp ("Teaspoon"): A library for ground temperature data. Journal of Open Source Software, 7(77), 4704, https://doi.org/10.21105/joss.04704

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