turbo-broccoli 1.2.0

JSON (de)serialization extensions

Turbo Broccoli

JSON (de)serialization extensions, originally aimed at numpy and tensorflow objects.

Usage

import json
import numpy as np
import turbo_broccoli as tb

obj = {
    "an_array": np.ndarray([[1, 2], [3, 4]], dtype="float32")
}
json.dumps(obj, cls=tb.TurboBroccoliEncoder)

produces the following string (modulo indentation):

{
    "an_array": {
        "__numpy__": {
            "__type__": "ndarray",
            "__version__": 1,
            "data": "AACAPwAAAEAAAEBAAACAQA==",
            "dtype": "<f4",
            "shape": [2, 2]
        }
    }
}

For deserialization, simply use

json.loads(json_string, cls=tb.TurboBroccoliDecoder)

Supported types

• bytes

• collections.deque

• Dataclasses. Serialization is straightforward:

  @dataclass
  class C:
      a: int
      b: str
  
  doc = json.dumps({"c": C(a=1, b="Hello")}, cls=tb.TurboBroccoliEncoder)
  

  For deserialization, first register the class:

  from turbo_broccoli.environment import register_dataclass
  
  register_dataclass("C", C)
  json.loads(doc, cls=tb.TurboBroccoliDecoder)
  

• Generic object, serialization only. A generic object is an object that has the __turbo_broccoli__ attribute. This attribute is expected to be a list of attributes whose values will be serialized. For example,

  class C:
      __turbo_broccoli__ = ["a"]
      a: int
      b: int
  
  x = C()
  x.a = 42
  x.b = 43
  json.dumps(x, cls=tb.TurboBroccoliEncoder)
  

  produces the following string (modulo indentation):

  {
      "__generic__": {
          "__version__": 1,
          "data": {
              "a": 42,
          }
      }
  }
  

  Registered attributes can of course have any type supported by Turbo Broccoli, such as numpy arrays. Registered attributes can be @property methods.

• keras.Model

• standard subclasses of

  • keras.layers.Layer,
  • keras.losses.Loss,
  • keras.metrics.Metric,
  • keras.optimizers.Optimizer

• numpy.number

• numpy.ndarray with numerical dtype

• pandas.DataFrame and pandas.Series, but with the following limitations:

  • the following dtypes are not supported: complex, object, timedelta

  • the column / series names must be strings and not numbers. The following is not acceptable:

    df = pd.DataFrame([[1, 2], [3, 4]])
    print([c for c in df.columns])
    # [0, 1]
    print([type(c) for c in df.columns])
    # [int, int]
    

• tensorflow.Tensor with numerical dtype, but not tensorflow.RaggedTensor

Environment variables

Some behaviors of Turbo Broccoli can be tweaked by setting specific environment variables. If you want to modify these parameters programatically, do not do so by modifying os.environ. Rather, use the methods of turbo_broccoli.environment.

• TB_ARTIFACT_PATH (default: ./): During serialization, Turbo Broccoli may create artifacts to which the JSON object will point to. The artifacts will be stored in TB_ARTIFACT_PATH. For example, if arr is a big numpy array,

  obj = {"an_array": arr}
  json.dumps(obj, cls=tb.TurboBroccoliEncoder)
  

  will generate the following string (modulo indentation and id)

  {
      "an_array": {
          "__numpy__": {
              "__type__": "ndarray",
              "__version__": 2,
              "id": "70692d08-c4cf-4231-b3f0-0969ea552d5a"
          }
      }
  }
  

  and a 70692d08-c4cf-4231-b3f0-0969ea552d5a.npy file has been created in TB_ARTIFACT_PATH.

• TB_KERAS_FORMAT (default: tf, valid values are json, h5, and tf): The serialization format for keras models. If h5 or tf is used, an artifact following said format will be created in TB_ARTIFACT_PATH. If json is used, the model will be contained in the JSON document (anthough the weights may be in artifacts if they are too large).

• TB_MAX_NBYTES (default: 8000): The maximum byte size of an numpy array or pandas object beyond which serialization will produce an artifact instead of storing it in the JSON document. This does not limit the size of the overall JSON document though. 8000 bytes should be enough for a numpy array of 1000 float64s to be stored in-document.

Contributing

Dependencies

• python3.9 or newer;
• requirements.txt for runtime dependencies;
• requirements.dev.txt for development dependencies.
• make (optional);

Simply run

virtualenv venv -p python3.9
. ./venv/bin/activate
pip install --upgrade pip
pip install -r requirements.txt
pip install -r requirements.dev.txt

Documentation

Simply run

make docs

This will generate the HTML doc of the project, and the index file should be at docs/index.html. To have it directly in your browser, run

make docs-browser

Code quality

Don't forget to run

make

to format the code following black, typecheck it using mypy, and check it against coding standards using pylint.

Unit tests

Run

make test

to have pytest run the unit tests in tests/.

Credits

This project takes inspiration from Crimson-Crow/json-numpy.