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API that interacts with Illumina Clarity LIMS REST architecture.

Project description


Provides a simple REST implementation for use with Clarity endpoints.


Was designed to implement a simple way to interact with Clarity REST architecture.


  • Get will do a batch get if that end point exists, otherwise it will return a response similar to what a batch get returns.
  • Caller can add queries to get using a keyword.
  • Caches every get to eliminate excessive get calls.
  • All REST calls will throw an exception if they failed.

Code Example

from ua_clarity_api import ua_clarity_api

api = ua_clarity_api.ClarityApi(host, username, password)
uris_files = api.download_files("some file uri")
data = api.get("some endpoint")


pip install ua-clarity-api


pip install --update nose
cd ./repo
cd ./tests

How to Use

  • You'll need to instantiate a ClarityApi object with a correct host, and the username/password to access that host's endpoints.
  • Get can retrieve resources from endpoints and can utilize queries with the "parameters" keyword.
  • Put and Post can update or create new resources given the appropriate endpoint and a well-formed payload.
  • Delete can remove a resource from an endpoint.
  • Download_files will create temporary files from a list of file uris and returns them as a dictionary mapping of uri: tempfile.


sterns1 raflopjr RyanJohannesBland



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