universalizer

The KG-Hub Universalizer provides functions for knowledge graph cleanup and identifier normalization.

Installation

Install with pip:

pip install universalizer

Install with Poetry.

git clone https://github.com/Knowledge-Graph-Hub/universalizer.git
cd universalizer
poetry install

With KGX format node and edge files in the same directory:

universalizer run path/to/directory

Or, if they're in a single tar.gz file:

universalizer run -c graph.tar.gz

SSSOM-format maps are supported. Use a single map file:

univeralizer run -m poro-mp-exact-1.0.sssom.tsv path/to/directory

or a whole directory of them:

univeralizer run -m path/to/mapfiles path/to/directory

To map node categories as well as identifiers, use the -u flag:

univeralizer run -m path/to/mapfiles path/to/directory -u

For SSSOM maps from subject_id to object_id, subject node IDs will be remapped to object IDs.

If the object_category value is specified the node's category ID will be remapped as well.

Note that this will complete node normalization and ID remapping.

Maps should use the normalized form (e.g., specify "FBbt:00005201", not "FBBT:00005201", even if the latter form is in the input graph.)

For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.

Source distribution for universalizer 0.0.12
File	Size	Uploaded
universalizer-0.0.12.tar.gz	10.6 kB	Mar 21, 2025	Details

Table of built distributions (wheels) for universalizer 0.0.12
File	Interpreter	ABI	Platform	Reset
universalizer-0.0.12-py3-none-any.whl 12.1 kB Mar 21, 2025	Python 3	none	any	Details

Total release size: 22.7 kB

Download URL	universalizer-0.0.12.tar.gz
Size	10.6 kB
Tags	Source
SHA-256 checksum How to use checksums	`a3d8de28c5c7c4e161d63b90dc10df08ea796985dba00f356a7787fb0894213d`
BLAKE2b-256 checksum How to use checksums	`6daedd5262a01ba0d1b3cb6b6dea81d383b053d9c04fcd605b94c08f5e053e21`
Upload date	Mar 21, 2025
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`poetry/2.1.1 CPython/3.12.3 Linux/5.15.167.4-microsoft-standard-WSL2`

Download URL	universalizer-0.0.12-py3-none-any.whl
Size	12.1 kB
Tags	Python 3
SHA-256 checksum How to use checksums	`d9edc2686b7f0c1c670a21b43b1c0c7bddf5dd674b17c03559722227e6316d4b`
BLAKE2b-256 checksum How to use checksums	`6e4148c1494ccd8addaf2e12c5bb47e12007b4f037b026ccd0944f329474c488`
Upload date	Mar 21, 2025
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`poetry/2.1.1 CPython/3.12.3 Linux/5.15.167.4-microsoft-standard-WSL2`