Skip to main content

ROOT I/O in pure Python and NumPy.

Project description

Scikit-HEP NSF-1836650 DOI Python 3.5‒3.9 License

Uproot is a reader and a writer of the ROOT file format using only Python and Numpy. Unlike the standard C++ ROOT implementation, Uproot is only an I/O library, primarily intended to stream data into machine learning libraries in Python. Unlike PyROOT and root_numpy, Uproot does not depend on C++ ROOT. Instead, it uses Numpy to cast blocks of data from the ROOT file as Numpy arrays.

Installation

Uproot can be installed from PyPI using pip (Awkward Array is optional but highly recommended):

pip install uproot awkward

Uproot is also available using conda (so is Awkward Array, which conda installs automatically):

conda install -c conda-forge uproot

If you have already added conda-forge as a channel, the -c conda-forge is unnecessary. Adding the channel is recommended because it ensures that all of your packages use compatible versions:

conda config --add channels conda-forge
conda update --all

Note: if you need to write ROOT files, you'll need to use the deprecated uproot3 for now. This feature is coming to the new version soon.

Getting help

Start with the tutorials and reference documentation.

Installation for developers

Uproot is an ordinary Python library; you can get a copy of the code with

git clone https://github.com/scikit-hep/uproot4.git

and install it locally by calling pip install . in the repository directory.

If you need to develop Awkward Array as well, see its installation for developers.

Dependencies

Uproot's only strict dependency is NumPy. This is the only dependency that pip will automatically install.

Awkward Array is highly recommended. It is not a strict dependency to allow Uproot to be used in restrictive environments. If you're using Uproot without Awkward Array, you'll have to use the library="np" option or globally set uproot.default_library to return arrays as NumPy arrays (see documentation).

  • awkward: be sure to use Awkward Array 1.x.

The following libraries are also useful in conjunction with Uproot, but are not necessary. If you call a function that needs one, you'll be prompted to install it. (Conda installs most of these automatically.)

For ROOT files, compressed different ways:

  • lz4 and xxhash: only if reading ROOT files that have been LZ4-compressed.
  • zstandard: only if reading ROOT files that have been ZSTD-compressed.
  • backports.lzma: only if reading ROOT files that have been LZMA-compressed (in Python 2).

For remote data:

  • xrootd: only if reading files with root:// URLs.

For exporting data to other libraries:

  • pandas: only if library="pd".
  • cupy: only if library="cp" (reads arrays onto GPUs).
  • boost-histogram: only if converting histograms to boost-histogram with histogram.to_boost().
  • hist: only if converting histograms to hist with histogram.to_hist().

Acknowledgements

Support for this work was provided by NSF cooperative agreement OAC-1836650 (IRIS-HEP), grant OAC-1450377 (DIANA/HEP) and PHY-1520942 (US-CMS LHC Ops).

Thanks especially to the gracious help of Uproot contributors (including the original repository).


Jim Pivarski

💻 📖 🚇 🚧

Pratyush Das

💻 🚇

Chris Burr

💻 🚇

Dmitri Smirnov

💻

Matthew Feickert

🚇

Tamas Gal

💻

Luke Kreczko

💻 ⚠️

Nicholas Smith

💻

Noah Biederbeck

💻

Oksana Shadura

💻 🚇

Henry Schreiner

💻 🚇 ⚠️

Mason Proffitt

💻 ⚠️

Jonas Rembser

💻

benkrikler

💻

Hans Dembinski

📖

Marcel R.

💻

Ruggero Turra

💻

Jonas Rübenach

💻

bfis

💻

Raymond Ehlers

💻

Andrzej Novak

💻

Josh Bendavid

💻

Doug Davis

💻

Chao Gu

💻

Lukas Koch

💻

Michele Peresano

💻

Edoardo

💻

JMSchoeffmann

💻

alexander-held

💻

💻: code, 📖: documentation, 🚇: infrastructure, 🚧: maintainance, ⚠: tests and feedback, 🤔: foundational ideas.

Project details


Release history Release notifications | RSS feed

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

uproot-4.0.1rc1.tar.gz (163.1 kB view details)

Uploaded Source

Built Distribution

uproot-4.0.1rc1-py2.py3-none-any.whl (196.0 kB view details)

Uploaded Python 2 Python 3

File details

Details for the file uproot-4.0.1rc1.tar.gz.

File metadata

  • Download URL: uproot-4.0.1rc1.tar.gz
  • Upload date:
  • Size: 163.1 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.2.0 pkginfo/1.6.1 requests/2.25.0 setuptools/49.2.1 requests-toolbelt/0.9.1 tqdm/4.54.1 CPython/3.9.0

File hashes

Hashes for uproot-4.0.1rc1.tar.gz
Algorithm Hash digest
SHA256 706949f8f84bc944b6a4fcd5f2dd5d03111e399ba6f77bff68ad5b3394e5d0ff
MD5 8af4b87444ddd98aa598ff463d15641f
BLAKE2b-256 e00fd9473dd6e35d32f6ada6e6a462deae5850f3b52e345eab43add17e1213ff

See more details on using hashes here.

Provenance

File details

Details for the file uproot-4.0.1rc1-py2.py3-none-any.whl.

File metadata

  • Download URL: uproot-4.0.1rc1-py2.py3-none-any.whl
  • Upload date:
  • Size: 196.0 kB
  • Tags: Python 2, Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.2.0 pkginfo/1.6.1 requests/2.25.0 setuptools/49.2.1 requests-toolbelt/0.9.1 tqdm/4.54.1 CPython/3.9.0

File hashes

Hashes for uproot-4.0.1rc1-py2.py3-none-any.whl
Algorithm Hash digest
SHA256 c193da529906e3cec734fcd0409027b4f69b6e47f205fee2688163a4d8f705bc
MD5 4886f36ff125c403ecfc7d262bc09980
BLAKE2b-256 d7332ea206b9a1b71542700f3655208277ded00314b3e0d9672b0e82410663d0

See more details on using hashes here.

Provenance

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page