A beginner friendly TUI tool for variant calling
Project description
varcall
A genome variant calling tool (wrapper) written in python using textual lib
Table of Contents
Installation
[!NOTE] 🚧 Under early development 🚧
pip install varcall
Contributions are welcomed
[!NOTE] It is recommended to run
varcallin a conda environment
To install conda refer miniconda
varcall requires variant calling tools to run, you can download them by:
conda create -n varcall -y
conda install -c bioconda fastqc multiqc bwa samtools bcftools
License
varcall is distributed under the terms of the MIT license.
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