Variant Tools
A command line tool for the manipulation, annotation, and analysis of genetic variants from next-generation sequencing studies.
Installation
If you are using a conda environment, you can install variant tools with command
conda install variant_tools -c bioconda -c conda-forge
Option -c conda-forge is required to enforce the use of conda-forge version of dependencies (e.g. boost-cpp) over their counterpoarts in the base channel.
Otherwise, you can try to install it through pip
pip install variant_tools
You will need to install
libboostgslnumpyCythonhdf5blosc- A C++ compiler such as
gcc
which, in a conda environment, could be installed with command
conda install -c conda-forge boost-cpp gsl numpy cython blosc hdf5
This method can be used if you download or clone the latest version of variant tools from this repository.
Documentation
Please refer to Variant Tools documentation for details.
1 maintainer
Metadata
1 maintainer
Release files for variant-tools 3.1.3
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| variant_tools-3.1.3.tar.gz | 3.0 MB | Without provenance | Details for variant_tools-3.1.3.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| variant_tools-3.1.3-cp38-cp38-macosx_10_9_x86_64.whl | CPython 3.8 | CPython 3.8 | macOS 10.9+ x86-64 | Details for variant_tools-3.1.3-cp38-cp38-macosx_10_9_x86_64.whl |
Total release size: 6.2 MB
Release files / variant_tools-3.1.3.tar.gz
| Download URL | variant_tools-3.1.3.tar.gz |
|---|---|
| Size | 3.0 MB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
c5afa8a2129205492786700c93a117504b2162aa6df3d5d10ff575cc946a923c
|
|
BLAKE2b-256 checksum How to use checksums |
b12c0d52fe61b5e9915cde9894ec2bc853f5225ff86354a4474f192b65904fa9
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/3.1.1 pkginfo/1.5.0.1 requests/2.23.0 setuptools/46.2.0.post20200511 requests-toolbelt/0.9.1 tqdm/4.46.0 CPython/3.8.2
|
Release files / variant_tools-3.1.3-cp38-cp38-macosx_10_9_x86_64.whl
| Download URL | variant_tools-3.1.3-cp38-cp38-macosx_10_9_x86_64.whl |
|---|---|
| Size | 3.2 MB |
| Tags | CPython 3.8 macOS 10.9+ x86-64 |
|
SHA-256 checksum How to use checksums |
dca227998eb3ed13ea136dbd7ebe2c5f738972db9cc9a7e3525d1e9744609ee7
|
|
BLAKE2b-256 checksum How to use checksums |
824b08c99f88a8f2efea75475482f2691bee44bbc23472feef76abb2cac71470
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/3.1.1 pkginfo/1.5.0.1 requests/2.23.0 setuptools/46.2.0.post20200511 requests-toolbelt/0.9.1 tqdm/4.46.0 CPython/3.8.2
|
Security for variant-tools 3.1.3
Provenance
Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.
No provenance found
None of the files in this release were uploaded with provenance metadata.
A note on package security
PyPI is a repository for distributing packages, not a service for auditing them. While third-party security researchers and our staff do their best to detect and remove malicious packages, PyPI cannot guarantee the quality, security or suitability of any given package.
To learn more about protecting yourself from malicious actors, visit our package security documentation.
