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  • Requires: Python >=3.8
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Project description

vcf_subset

Efficient VCF subsetting by genome position. Written in Rust, but provided as a python module to save ~3 minutes per TB GVCF

Install

pip install vcf_subset

Local (dev) install

# Optional virtual environment
python -m virtualenv env
source env/bin/activate

# Install
pip install .

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This version

2.0.0

1.1.2

1.1.1

1.1.0

1.0.0

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SHA256 d1bcfd39d28544a190bfe852e5e72c9d5f0c7fcd7d2f83c45175e9fbbb46ab3d
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SHA256 00dab4c4f32449a4c2d0bffe45a7a0855a07b730fe7fdf97f9b6238fabf02e78
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SHA256 bfd5959df65bfa0899ed98f7b87185862555a416efee88135559ce7efa3fe287
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SHA256 cb6beb2539738fb6bcb046c854861216c0339dde8b00a88901d038fbd8cbe2c4
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SHA256 c22ef2af7a3d96f05593487e06b1666afd190b60f41eddbcfe787bea70a23aa0
MD5 1fcf6c2e0c8b835bdbc5b907d4504f3e
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SHA256 d10f6181b5b698defc15f918580f83114902766f4c63685f4284f86ac0d0a37d
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SHA256 85c5d9672f788256aad8f77ee36aa95fc5c85aec1191ceac64fe09402a5150ef
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SHA256 1ffde0c3c86b86f110d4d007aada0093e31a0fd5b3a6a432272c3a9191f9f474
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SHA256 75d500e44d680feb9cffba9872a7ecb591820a234429e49ccbb9ea5ab7ea25ac
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SHA256 f0fb4dd2793980af7850627a4badafbaf50517ea96aee61118c0cd702536b8a7
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SHA256 6264612dd76b87c35dec180122a2d9471e59037910a9c34735de5bbebf4978c0
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SHA256 c6382552649fec91ff1c5545c8d24eecc41138d29b94d9c2d12df6ef40097d0b
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SHA256 00f1dcdd1d01224295c64aadd6c902d7875922747eccd747217c4cdd86662d71
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SHA256 877480269d6955daf02321d21865a02ba131505dcd8aee42cf46f4c561420753
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SHA256 b9d386d4ee2dec4c7df75edc4365aa6e797a4d624fb7825aa705072e378e0981
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SHA256 243d0175d9995d89684e8a9bae7007933f556869ce9ea99d4d9adf7bb5393975
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SHA256 19da05036a7070a98805436da23009c9f1da2dbfd9f0f2fea122d6d867e09593
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SHA256 e7612b774e710edd1edce8cdbadef5e2c5454c047d8755101a7bae7fea724af4
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SHA256 b736cc66ea402f7f739569c1cb5fffc4073611491ff7680619f1f633f53750c2
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BLAKE2b-256 507987896ac2799ad05a5b75ec3cffdca301bb9f90c0f1d684433743e8dd8b5e

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SHA256 8a11e263a2ff358f53f97ae35384d4ef80e9f4553d77f5a6a1d6a36f38117457
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SHA256 6a3fd02224fe2bb24cbb4cf365744926cc1cceb51ab45f5f0fee8b0dfa1e6dd7
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