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Project description
Convert vcf in parquet 🧬 💻
Install
mamba install vcf2parquet
Usage
vcf2parquet-bin
USAGE:
vcf2parquet [OPTIONS] --input <INPUT> <SUBCOMMAND>
OPTIONS:
-b, --batch-size <BATCH_SIZE> Batch size (default 100,000)
-c, --compression <COMPRESSION> Compression method (default snappy) [possible values:
uncompressed, snappy, gzip, lzo, brotli, lz4]
-h, --help Print help information
-i, --input <INPUT> Input path
SUBCOMMANDS:
convert Convert a vcf in a parquet
help Print this message or the help of the given subcommand(s)
split Convert a vcf in multiple parquet file each file contains `batch_size` record
Subcommand convert and split change how output is write.
vcf2parquet -i {input}.vcf.[gz|bz2|xz] convert -o {output}.parquet
vcf2parquet -i {input}.vcf.[gz|bz2|xz] -c lz4 -b 10000 convert -o {output}.parquet
vcf2parquet -i {input}.vcf.[gz|bz2|xz] split -f format_partition_{}.parquet
Minimum supported Rust version
Currently the minimum supported Rust version is 1.74.1.
Project details
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File details
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File hashes
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File hashes
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File hashes
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File hashes
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File hashes
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MD5 | c53fc3414df3faeb3e5feac322d437c1 |
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File hashes
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File metadata
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