vcfViewer 0.1

A toolkit for visualizing VCF metadata.

# vcfViewer A toolkit for visualizing variant call format (VCF) file data.

Developed by Tom Sasani for MDCRC 6521 at the University of Utah.

## About

vcfViewer is a basic toolkit that allows users to create useful visualizations of VCF metadata in [bokeh](http://bokeh.pydata.org/en/latest/). For example, users can plot quality scores,

## Usage

To visually determine which variants in a VCF meet a quality score threshold, simply run:

python plot_qual.py [vcf] [threshold]

## Dependencies

bokeh

To install, run conda install bokeh.

cyvcf2

To install, run pip install cyvcf2.