Wrapper for querying VirtualFlyBrain servers.

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VFB_connect test_vfb-connect publish-to-pypi PyPI version DOI

test_notebooks Documentation Status

VFB_connect is a Python lib that wraps data/knowledgeBase query endpoints and returns DataFrame tables.

Available on PyPi:

pip install vfb_connect

Some examples:

# VFB connect object wraps connections and queries to public VFB servers.

from vfb_connect import vfb

# Get TermInfo for Types/Classes, DataSets and anatomical individuals.

vfb.get_TermInfo(['FBbt_00003686'])

vfb.get_TermInfo(['Ito02013'])

vfb.get_TermInfo(['VFB_00010001'])

# Get all terms relevant to a brain region (all parts and all overlapping cells.  Query by label supported by default.

vfb.get_terms_by_region('fan-shaped body')

TermInfo return a pandas DataFrame by default but can also return a dict summary or full VFB_json values that conform to VFB_json_schema

For more examples see our Quick Guide Jupyter Notebook

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2.2.15

2.2.14

2.2.13

2.2.12

2.2.11

2.2.10

2.2.9

2.2.8

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2.2.1

2.2.0

2.1.24

2.1.23

2.1.22

2.1.21

2.1.20

2.1.19

2.1.18

2.1.17

This version

2.1.16

2.1.15

2.1.14

2.1.13

2.1.12

2.1.11

2.1.10

2.1.9

2.1.8

2.1.7

2.1.6

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2.1.3

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2.1.1

2.1.0

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2.0.1

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1.6.0

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1.2.20

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1.2.17

1.2.16

1.2.15

1.2.14

1.2.13

1.2.12

1.2.10

1.2.9

1.2.8

1.2.7

1.2.6.9

1.2.6.8

1.2.6.7

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1.1.1

1.1

1.0.1

1.0

0.1.1

0.1.0

0.0.3

0.0.2

0.0.1

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