Wrapper for querying VirtualFlyBrain servers.

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VFB_connect test_vfb-connect publish-to-pypi PyPI version DOI

test_notebooks Documentation Status

VFB_connect is a Python lib that wraps data/knowledgeBase query endpoints and returns DataFrame tables.

Available on PyPi:

pip install vfb_connect

Some examples:

# VFB connect object wraps connections and queries to public VFB servers.

from vfb_connect import vfb

# Get TermInfo for Types/Classes, DataSets and anatomical individuals.

vfb.get_TermInfo(['FBbt_00003686'])

vfb.get_TermInfo(['Ito02013'])

vfb.get_TermInfo(['VFB_00010001'])

# Get all terms relevant to a brain region (all parts and all overlapping cells.  Query by label supported by default.

vfb.get_terms_by_region('fan-shaped body')

TermInfo return a pandas DataFrame by default but can also return a dict summary or full VFB_json values that conform to VFB_json_schema

For more examples see our Quick Guide Jupyter Notebook

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