Wrapper for querying VirtualFlyBrain servers.

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VFB_connect test_vfb-connect publish-to-pypi PyPI version DOI

test_notebooks Documentation Status

VFB_connect is a Python lib that wraps data/knowledgeBase query endpoints and returns DataFrame tables.

Available on PyPi:

pip install vfb_connect

Some examples:

# VFB connect object wraps connections and queries to public VFB servers.

from vfb_connect import vfb

# Get TermInfo for Types/Classes, DataSets and anatomical individuals.

vfb.term('FBbt_00003686')

vfb.terms(['Ito02013'])

vfb.terms(['VFB_00010001'])

# Get all terms relevant to a brain region (all parts and all overlapping cells. You can query by label, symbol, synonym, id or xref.

vfb.get_terms_by_region('fan-shaped body')

TermInfo returns a pandas DataFrame by default but can also return a dict summary or full VFBTerms.

For more examples see our Quick Guide Jupyter Notebook

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