Skip to main content

Wrapper for querying VirtualFlyBrain servers.

Project description

VFB_connect test_vfb-connect publish-to-pypi PyPI version DOI

test_notebooks Documentation Status

VFB_connect is a Python lib that wraps data/knowledgeBase query endpoints and returns DataFrame tables.

Available on PyPi:

pip install vfb_connect

Some examples:

# VFB connect object wraps connections and queries to public VFB servers.

from vfb_connect import vfb

# Get TermInfo for Types/Classes, DataSets and anatomical individuals.

vfb.term('FBbt_00003686')

vfb.terms(['Ito02013'])

vfb.terms(['VFB_00010001'])

# Get all terms relevant to a brain region (all parts and all overlapping cells. You can query by label, symbol, synonym, id or xref.

vfb.get_terms_by_region('fan-shaped body')

TermInfo returns a pandas DataFrame by default but can also return a dict summary or full VFBTerms.

For more examples see our Quick Guide Jupyter Notebook

Project details


Release history Release notifications | RSS feed

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

vfb-connect-2.3.9.tar.gz (47.8 MB view details)

Uploaded Source

Built Distribution

vfb_connect-2.3.9-py3-none-any.whl (7.6 MB view details)

Uploaded Python 3

File details

Details for the file vfb-connect-2.3.9.tar.gz.

File metadata

  • Download URL: vfb-connect-2.3.9.tar.gz
  • Upload date:
  • Size: 47.8 MB
  • Tags: Source
  • Uploaded using Trusted Publishing? Yes
  • Uploaded via: twine/5.1.1 CPython/3.12.7

File hashes

Hashes for vfb-connect-2.3.9.tar.gz
Algorithm Hash digest
SHA256 5086ab2ab25148bfa9358551595c7fae616fcfca5cd1bc4f1b86f1061540ed4e
MD5 e14209802d7893c243cd715d1daf9734
BLAKE2b-256 ac4a300239f930fe4bc27f061e6101b847f778f4032cb7b4d8f306d04eb6f644

See more details on using hashes here.

Provenance

The following attestation bundles were made for vfb-connect-2.3.9.tar.gz:

Publisher: publish-to-pypi.yml on VirtualFlyBrain/VFB_connect

Attestations: Values shown here reflect the state when the release was signed and may no longer be current.

File details

Details for the file vfb_connect-2.3.9-py3-none-any.whl.

File metadata

  • Download URL: vfb_connect-2.3.9-py3-none-any.whl
  • Upload date:
  • Size: 7.6 MB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? Yes
  • Uploaded via: twine/5.1.1 CPython/3.12.7

File hashes

Hashes for vfb_connect-2.3.9-py3-none-any.whl
Algorithm Hash digest
SHA256 9513795eb59d6e1cb371207555e3ff5a48f34e3177a4ee0ea7aa053d12f3c7fd
MD5 381df3ea5d0b07ab398746ca73b92376
BLAKE2b-256 9495684d90859dc81ca65e32b401edfb8f481d5be4438c6fd7403b90e136da75

See more details on using hashes here.

Provenance

The following attestation bundles were made for vfb_connect-2.3.9-py3-none-any.whl:

Publisher: publish-to-pypi.yml on VirtualFlyBrain/VFB_connect

Attestations: Values shown here reflect the state when the release was signed and may no longer be current.

Supported by

AWS Cloud computing and Security Sponsor Datadog Monitoring Fastly CDN Google Download Analytics Pingdom Monitoring Sentry Error logging StatusPage Status page