Wrapper for querying VirtualFlyBrain servers.
Project description
VFB_connect

VFB_connect is a Python lib that wraps data/knowledgeBase query endpoints and returns DataFrame tables.
Available on PyPi:
pip install vfb_connect
Some examples:
# VFB connect object wraps connections and queries to public VFB servers.
from vfb_connect import vfb
# Get TermInfo for Types/Classes, DataSets and anatomical individuals.
vfb.term('FBbt_00003686')
vfb.terms(['Ito02013'])
vfb.terms(['VFB_00010001'])
# Get all terms relevant to a brain region (all parts and all overlapping cells. You can query by label, symbol, synonym, id or xref.
vfb.get_terms_by_region('fan-shaped body')
TermInfo returns a pandas DataFrame by default but can also return a dict summary or full VFBTerms.
For more examples see our Quick Guide Jupyter Notebook
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
File details
Details for the file vfb-connect-2.3.9.tar.gz
.
File metadata
- Download URL: vfb-connect-2.3.9.tar.gz
- Upload date:
- Size: 47.8 MB
- Tags: Source
- Uploaded using Trusted Publishing? Yes
- Uploaded via: twine/5.1.1 CPython/3.12.7
File hashes
Algorithm | Hash digest | |
---|---|---|
SHA256 |
5086ab2ab25148bfa9358551595c7fae616fcfca5cd1bc4f1b86f1061540ed4e
|
|
MD5 |
e14209802d7893c243cd715d1daf9734
|
|
BLAKE2b-256 |
ac4a300239f930fe4bc27f061e6101b847f778f4032cb7b4d8f306d04eb6f644
|
Provenance
The following attestation bundles were made for vfb-connect-2.3.9.tar.gz
:
Publisher:
publish-to-pypi.yml
on VirtualFlyBrain/VFB_connect
-
Statement:
-
Statement type:
https://in-toto.io/Statement/v1
-
Predicate type:
https://docs.pypi.org/attestations/publish/v1
-
Subject name:
vfb_connect-2.3.9.tar.gz
-
Subject digest:
5086ab2ab25148bfa9358551595c7fae616fcfca5cd1bc4f1b86f1061540ed4e
- Sigstore transparency entry: 236549520
- Sigstore integration time:
-
Permalink:
VirtualFlyBrain/VFB_connect@c713930f113afeefa6d77fc26a67974b00864ca9
-
Branch / Tag:
refs/tags/v2.3.9
- Owner: https://github.com/VirtualFlyBrain
-
Access:
public
-
Token Issuer:
https://token.actions.githubusercontent.com
-
Runner Environment:
github-hosted
-
Publication workflow:
publish-to-pypi.yml@c713930f113afeefa6d77fc26a67974b00864ca9
-
Trigger Event:
release
-
Statement type:
File details
Details for the file vfb_connect-2.3.9-py3-none-any.whl
.
File metadata
- Download URL: vfb_connect-2.3.9-py3-none-any.whl
- Upload date:
- Size: 7.6 MB
- Tags: Python 3
- Uploaded using Trusted Publishing? Yes
- Uploaded via: twine/5.1.1 CPython/3.12.7
File hashes
Algorithm | Hash digest | |
---|---|---|
SHA256 |
9513795eb59d6e1cb371207555e3ff5a48f34e3177a4ee0ea7aa053d12f3c7fd
|
|
MD5 |
381df3ea5d0b07ab398746ca73b92376
|
|
BLAKE2b-256 |
9495684d90859dc81ca65e32b401edfb8f481d5be4438c6fd7403b90e136da75
|
Provenance
The following attestation bundles were made for vfb_connect-2.3.9-py3-none-any.whl
:
Publisher:
publish-to-pypi.yml
on VirtualFlyBrain/VFB_connect
-
Statement:
-
Statement type:
https://in-toto.io/Statement/v1
-
Predicate type:
https://docs.pypi.org/attestations/publish/v1
-
Subject name:
vfb_connect-2.3.9-py3-none-any.whl
-
Subject digest:
9513795eb59d6e1cb371207555e3ff5a48f34e3177a4ee0ea7aa053d12f3c7fd
- Sigstore transparency entry: 236549527
- Sigstore integration time:
-
Permalink:
VirtualFlyBrain/VFB_connect@c713930f113afeefa6d77fc26a67974b00864ca9
-
Branch / Tag:
refs/tags/v2.3.9
- Owner: https://github.com/VirtualFlyBrain
-
Access:
public
-
Token Issuer:
https://token.actions.githubusercontent.com
-
Runner Environment:
github-hosted
-
Publication workflow:
publish-to-pypi.yml@c713930f113afeefa6d77fc26a67974b00864ca9
-
Trigger Event:
release
-
Statement type: