Wrapper for querying VirtualFlyBrain knowledge graph.
Project description
VFBquery
to setup requirements:
pip install --upgrade vfbquery
To get term info for a term: get_term_info(ID)
e.g.
import vfbquery as vfb
Class example:
vfb.get_term_info('FBbt_00003748')
{
'Name':'medulla',
'Id':'FBbt_00003748',
'SuperTypes':[
'Entity',
'Adult',
'Anatomy',
'Class',
'Nervous_system',
'Synaptic_neuropil',
'Synaptic_neuropil_domain',
'Visual_system'
],
'Meta':{
'Name':'[medulla](FBbt_00003748)',
'Description':'The second optic neuropil, sandwiched between the lamina and the lobula complex. It is divided into 10 layers: 1-6 make up the outer (distal) medulla, the seventh (or serpentine) layer exhibits a distinct architecture and layers 8-10 make up the inner (proximal) medulla (Ito et al., 2014).',
'Comment':'',
'Types':'[synaptic neuropil domain](FBbt_00040007)',
'Relationships':'[develops from](RO_0002202): [medulla anlage](FBbt_00001935); [is part of](BFO_0000050): [adult optic lobe](FBbt_00003701)',
'Cross References':' [Insect Brain DB](https://insectbraindb.org/): [38](https://insectbraindb.org/app/structures/38)'
},
'Tags':[
'Adult',
'Nervous_system',
'Synaptic_neuropil_domain',
'Visual_system'
],
'Queries':[
{
'query':'ListAllAvailableImages',
'label':'List all available images of medulla',
'function':'get_instances',
'takes':{
'short_form':{
'$and':[
'Class',
'Anatomy'
]
},
'default':{
'short_form':'FBbt_00003748'
}
},
'preview':0,
'preview_columns':[
'id',
'label',
'tags',
'thumbnail'
],
'preview_results':{
'headers':{
'id':{
'title':'Add',
'type':'selection_id',
'order':-1
},
'label':{
'title':'Name',
'type':'markdown',
'order':0,
'sort':{
0:'Asc'
}
},
'tags':{
'title':'Gross Types',
'type':'tags',
'order':3
},
'thumbnail':{
'title':'Thumbnail',
'type':'markdown',
'order':9
}
},
'rows':[
]
},
'output_format':'table',
'count':4
}
],
'IsIndividual':False,
'IsClass':True,
'Examples':{
'VFB_00017894':[
{
'id':'VFB_00030624',
'label':'medulla on adult brain template JFRC2',
'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/thumbnail.png',
'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/thumbnailT.png',
'nrrd':'https://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/volume.nrrd',
'wlz':'https://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/volume.wlz',
'obj':'https://www.virtualflybrain.org/data/VFB/i/0003/0624/VFB_00017894/volume_man.obj'
}
],
'VFB_00030786':[
{
'id':'VFB_00030810',
'label':'medulla on adult brain template Ito2014',
'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0003/0810/thumbnail.png',
'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0003/0810/thumbnailT.png',
'nrrd':'https://www.virtualflybrain.org/data/VFB/i/0003/0810/volume.nrrd',
'wlz':'https://www.virtualflybrain.org/data/VFB/i/0003/0810/volume.wlz',
'obj':'https://www.virtualflybrain.org/data/VFB/i/0003/0810/volume_man.obj'
}
],
'VFB_00101384':[
{
'id':'VFB_00101385',
'label':'ME(R) on JRC_FlyEM_Hemibrain',
'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/thumbnail.png',
'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/thumbnailT.png',
'nrrd':'https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/volume.nrrd',
'wlz':'https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/volume.wlz',
'obj':'https://www.virtualflybrain.org/data/VFB/i/0010/1385/VFB_00101384/volume_man.obj'
}
],
'VFB_00101567':[
{
'id':'VFB_00102107',
'label':'ME on JRC2018Unisex adult brain',
'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/thumbnail.png',
'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/thumbnailT.png',
'nrrd':'https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/volume.nrrd',
'wlz':'https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/volume.wlz',
'obj':'https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/volume_man.obj'
}
]
},
'IsTemplate':False
}
Individual example:
vfb.get_term_info('VFB_00000001')
{
'Name':'fru-M-200266',
'Id':'VFB_00000001',
'SuperTypes':[
'Entity',
'Adult',
'Anatomy',
'Cell',
'Expression_pattern_fragment',
'Individual',
'Nervous_system',
'Neuron',
'VFB',
'has_image',
'FlyCircuit',
'NBLAST'
],
'Meta':{
'Name':'[fru-M-200266](VFB_00000001)',
'Description':'',
'Comment':'OutAge: Adult 5~15 days',
'Types':'[adult DM6 lineage neuron](FBbt_00050144); [expression pattern fragment](VFBext_0000004)',
'Relationships':'[expresses](RO_0002292): [Scer\\GAL4[fru.P1.D]](FBal0276838); [is part of](BFO_0000050): [Scer\\GAL4[fru.P1.D] expression pattern](VFBexp_FBal0276838), [adult brain](FBbt_00003624), [male organism](FBbt_00007004); [overlaps](RO_0002131): [adult antennal lobe](FBbt_00007401), [adult crepine](FBbt_00045037), [adult lateral accessory lobe](FBbt_00003681), [superior posterior slope](FBbt_00045040), [vest](FBbt_00040041)',
'Cross References':'[FlyCircuit 1.0](http://flycircuit.tw): [fru-M-200266](http://flycircuit.tw/modules.php?name=clearpage&op=detail_table&neuron=fru-M-200266)'
},
'Tags':[
'Adult',
'Expression_pattern_fragment',
'Nervous_system',
'Neuron'
],
'Queries':[
{
'query':'SimilarMorphologyTo',
'label':'Find similar neurons to fru-M-200266',
'function':'get_similar_neurons',
'takes':{
'short_form':{
'$and':[
'Individual',
'Neuron'
]
},
'default':{
'neuron':'VFB_00000001',
'similarity_score':'NBLAST_score'
}
},
'preview':5,
'preview_columns':[
'id',
'score',
'name',
'tags',
'thumbnail'
],
'preview_results':{
'headers':{
'id':{
'title':'Add',
'type':'selection_id',
'order':-1
},
'score':{
'title':'Score',
'type':'numeric',
'order':1,
'sort':{
0:'Desc'
}
},
'name':{
'title':'Name',
'type':'markdown',
'order':1,
'sort':{
1:'Asc'
}
},
'tags':{
'title':'Tags',
'type':'tags',
'order':2
},
'thumbnail':{
'title':'Thumbnail',
'type':'markdown',
'order':9
}
},
'rows':[
{
'id':'VFB_00000333',
'score':0.61,
'name':'[fru-M-000204](VFB_00000333)',
'tags':'Nervous_system|Expression_pattern_fragment|Neuron|Adult',
'thumbnail':"[](VFB_00101567,VFB_00000333)"
},
{
'id':'VFB_00000333',
'score':0.61,
'name':'[fru-M-000204](VFB_00000333)',
'tags':'Nervous_system|Expression_pattern_fragment|Neuron|Adult',
'thumbnail':"[](VFB_00017894,VFB_00000333)"
},
{
'id':'VFB_00002439',
'score':0.6,
'name':'[fru-M-900020](VFB_00002439)',
'tags':'Expression_pattern_fragment|Nervous_system|Neuron|Adult',
'thumbnail':"[](VFB_00017894,VFB_00002439)"
},
{
'id':'VFB_00002439',
'score':0.6,
'name':'[fru-M-900020](VFB_00002439)',
'tags':'Expression_pattern_fragment|Nervous_system|Neuron|Adult',
'thumbnail':"[](VFB_00101567,VFB_00002439)"
},
{
'id':'VFB_00001880',
'score':0.59,
'name':'[fru-M-100041](VFB_00001880)',
'tags':'Nervous_system|Expression_pattern_fragment|Neuron|Adult',
'thumbnail':"[](VFB_00101567,VFB_00001880)"
}
]
},
'output_format':'table',
'count':60
}
],
'IsIndividual':True,
'Images':{
'VFB_00017894':[
{
'id':'VFB_00000001',
'label':'fru-M-200266',
'thumbnail':'https://virtualflybrain.org/reports/VFB_00000001/thumbnail.png',
'thumbnail_transparent':'https://virtualflybrain.org/reports/VFB_00000001/thumbnailT.png',
'nrrd':'https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/volume.nrrd',
'wlz':'https://virtualflybrain.org/reports/VFB_00000001/volume.wlz',
'obj':'https://virtualflybrain.org/reports/VFB_00000001/volume.obj',
'swc':'https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00017894/volume.swc'
}
],
'VFB_00101567':[
{
'id':'VFB_00000001',
'label':'fru-M-200266',
'thumbnail':'https://virtualflybrain.org/reports/VFB_00000001/thumbnail.png',
'thumbnail_transparent':'https://virtualflybrain.org/reports/VFB_00000001/thumbnailT.png',
'nrrd':'https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/volume.nrrd',
'wlz':'https://virtualflybrain.org/reports/VFB_00000001/volume.wlz',
'obj':'https://virtualflybrain.org/reports/VFB_00000001/volume.obj',
'swc':'https://www.virtualflybrain.org/data/VFB/i/0000/0001/VFB_00101567/volume.swc'
}
]
},
'IsClass':False,
'IsTemplate':False,
'Licenses':{
0:{
'iri':'http://virtualflybrain.org/reports/VFBlicense_FlyCircuit_License',
'short_form':'VFBlicense_FlyCircuit_License',
'label':'FlyCircuit License',
'icon':'',
'source':'FlyCircuit 1.0 - single neurons (Chiang2010)',
'source_iri':'http://virtualflybrain.org/reports/Chiang2010'
}
}
}
Template example:
vfb.get_term_info('VFB_00101567')
{
'Name':'JRC2018Unisex',
'Id':'VFB_00101567',
'SuperTypes':[
'Entity',
'Adult',
'Anatomy',
'Individual',
'Nervous_system',
'Template',
'has_image'
],
'Meta':{
'Name':'[JRC2018Unisex](VFB_00101567)',
'Description':'Janelia 2018 unisex, averaged adult brain template',
'Comment':'',
'Types':'[adult brain](FBbt_00003624)'
},
'Tags':[
'Adult',
'Nervous_system'
],
'Queries':[
],
'IsIndividual':True,
'Images':{
'VFBc_00101567':[
{
'id':'VFBc_00101567',
'label':'JRC2018Unisex_c',
'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/thumbnail.png',
'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/thumbnailT.png',
'nrrd':'https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/volume.nrrd',
'wlz':'https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/volume.wlz',
'obj':'https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/volume_man.obj',
'index':0,
'center':{
'X':605.0,
'Y':283.0,
'Z':87.0
},
'extent':{
'X':1211.0,
'Y':567.0,
'Z':175.0
},
'voxel':{
'X':0.5189161,
'Y':0.5189161,
'Z':1.0
},
'orientation':'LPS'
}
]
},
'IsClass':False,
'IsTemplate':True,
'Domains':{
0:{
'id':'VFB_00101567',
'label':'JRC2018Unisex',
'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/thumbnail.png',
'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/1567/VFB_00101567/thumbnailT.png',
'index':0,
'center':None,
'type_label':'adult brain',
'type_id':'FBbt_00003624'
},
3:{
'id':'VFB_00102107',
'label':'ME on JRC2018Unisex adult brain',
'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/thumbnail.png',
'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2107/VFB_00101567/thumbnailT.png',
'index':3,
'center':None,
'type_label':'medulla',
'type_id':'FBbt_00003748'
},
4:{
'id':'VFB_00102108',
'label':'AME on JRC2018Unisex adult brain',
'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2108/VFB_00101567/thumbnail.png',
'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2108/VFB_00101567/thumbnailT.png',
'index':4,
'center':None,
'type_label':'accessory medulla',
'type_id':'FBbt_00045003'
},
5:{
'id':'VFB_00102109',
'label':'LO on JRC2018Unisex adult brain',
'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2109/VFB_00101567/thumbnail.png',
'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2109/VFB_00101567/thumbnailT.png',
'index':5,
'center':None,
'type_label':'lobula',
'type_id':'FBbt_00003852'
},
6:{
'id':'VFB_00102110',
'label':'LOP on JRC2018Unisex adult brain',
'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2110/VFB_00101567/thumbnail.png',
'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2110/VFB_00101567/thumbnailT.png',
'index':6,
'center':None,
'type_label':'lobula plate',
'type_id':'FBbt_00003885'
},
7:{
'id':'VFB_00102114',
'label':'CA on JRC2018Unisex adult brain',
'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2114/VFB_00101567/thumbnail.png',
'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2114/VFB_00101567/thumbnailT.png',
'index':7,
'center':None,
'type_label':'calyx of adult mushroom body',
'type_id':'FBbt_00007385'
},
10:{
'id':'VFB_00102118',
'label':'PED on JRC2018Unisex adult brain',
'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2118/VFB_00101567/thumbnail.png',
'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2118/VFB_00101567/thumbnailT.png',
'index':10,
'center':None,
'type_label':'pedunculus of adult mushroom body',
'type_id':'FBbt_00007453'
},
11:{
'id':'VFB_00102119',
'label':'aL on JRC2018Unisex adult brain',
'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2119/VFB_00101567/thumbnail.png',
'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2119/VFB_00101567/thumbnailT.png',
'index':11,
'center':None,
'type_label':'adult mushroom body alpha-lobe',
'type_id':'FBbt_00110657'
},
12:{
'id':'VFB_00102121',
'label':"a\\'L on JRC2018Unisex adult brain",
'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2121/VFB_00101567/thumbnail.png',
'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2121/VFB_00101567/thumbnailT.png',
'index':12,
'center':None,
'type_label':"adult mushroom body alpha'-lobe",
'type_id':'FBbt_00013691'
},
13:{
'id':'VFB_00102123',
'label':'bL on JRC2018Unisex adult brain',
'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2123/VFB_00101567/thumbnail.png',
'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2123/VFB_00101567/thumbnailT.png',
'index':13,
'center':None,
'type_label':'adult mushroom body beta-lobe',
'type_id':'FBbt_00110658'
},
14:{
'id':'VFB_00102124',
'label':"b\\'L on JRC2018Unisex adult brain",
'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2124/VFB_00101567/thumbnail.png',
'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2124/VFB_00101567/thumbnailT.png',
'index':14,
'center':None,
'type_label':"adult mushroom body beta'-lobe",
'type_id':'FBbt_00013694'
},
15:{
'id':'VFB_00102133',
'label':'gL on JRC2018Unisex adult brain',
'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2133/VFB_00101567/thumbnail.png',
'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2133/VFB_00101567/thumbnailT.png',
'index':15,
'center':None,
'type_label':'adult mushroom body gamma-lobe',
'type_id':'FBbt_00013695'
},
16:{
'id':'VFB_00102134',
'label':'FB on JRC2018Unisex adult brain',
'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2134/VFB_00101567/thumbnail.png',
'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2134/VFB_00101567/thumbnailT.png',
'index':16,
'center':None,
'type_label':'fan-shaped body',
'type_id':'FBbt_00003679'
},
18:{
'id':'VFB_00102135',
'label':'EB on JRC2018Unisex adult brain',
'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2135/VFB_00101567/thumbnail.png',
'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2135/VFB_00101567/thumbnailT.png',
'index':18,
'center':None,
'type_label':'ellipsoid body',
'type_id':'FBbt_00003678'
},
19:{
'id':'VFB_00102137',
'label':'PB on JRC2018Unisex adult brain',
'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2137/VFB_00101567/thumbnail.png',
'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2137/VFB_00101567/thumbnailT.png',
'index':19,
'center':None,
'type_label':'protocerebral bridge',
'type_id':'FBbt_00003668'
},
21:{
'id':'VFB_00102139',
'label':'BU on JRC2018Unisex adult brain',
'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2139/VFB_00101567/thumbnail.png',
'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2139/VFB_00101567/thumbnailT.png',
'index':21,
'center':None,
'type_label':'bulb',
'type_id':'FBbt_00003682'
},
22:{
'id':'VFB_00102140',
'label':'LAL on JRC2018Unisex adult brain',
'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2140/VFB_00101567/thumbnail.png',
'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2140/VFB_00101567/thumbnailT.png',
'index':22,
'center':None,
'type_label':'adult lateral accessory lobe',
'type_id':'FBbt_00003681'
},
23:{
'id':'VFB_00102141',
'label':'AOTU on JRC2018Unisex adult brain',
'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2141/VFB_00101567/thumbnail.png',
'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2141/VFB_00101567/thumbnailT.png',
'index':23,
'center':None,
'type_label':'anterior optic tubercle',
'type_id':'FBbt_00007059'
},
24:{
'id':'VFB_00102146',
'label':'AVLP on JRC2018Unisex adult brain',
'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2146/VFB_00101567/thumbnail.png',
'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2146/VFB_00101567/thumbnailT.png',
'index':24,
'center':None,
'type_label':'anterior ventrolateral protocerebrum',
'type_id':'FBbt_00040043'
},
25:{
'id':'VFB_00102148',
'label':'PVLP on JRC2018Unisex adult brain',
'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2148/VFB_00101567/thumbnail.png',
'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2148/VFB_00101567/thumbnailT.png',
'index':25,
'center':None,
'type_label':'posterior ventrolateral protocerebrum',
'type_id':'FBbt_00040042'
},
26:{
'id':'VFB_00102152',
'label':'PLP on JRC2018Unisex adult brain',
'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2152/VFB_00101567/thumbnail.png',
'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2152/VFB_00101567/thumbnailT.png',
'index':26,
'center':None,
'type_label':'posterior lateral protocerebrum',
'type_id':'FBbt_00040044'
},
27:{
'id':'VFB_00102154',
'label':'WED on JRC2018Unisex adult brain',
'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2154/VFB_00101567/thumbnail.png',
'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2154/VFB_00101567/thumbnailT.png',
'index':27,
'center':None,
'type_label':'wedge',
'type_id':'FBbt_00045027'
},
28:{
'id':'VFB_00102159',
'label':'LH on JRC2018Unisex adult brain',
'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2159/VFB_00101567/thumbnail.png',
'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2159/VFB_00101567/thumbnailT.png',
'index':28,
'center':None,
'type_label':'adult lateral horn',
'type_id':'FBbt_00007053'
},
29:{
'id':'VFB_00102162',
'label':'SLP on JRC2018Unisex adult brain',
'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2162/VFB_00101567/thumbnail.png',
'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2162/VFB_00101567/thumbnailT.png',
'index':29,
'center':None,
'type_label':'superior lateral protocerebrum',
'type_id':'FBbt_00007054'
},
30:{
'id':'VFB_00102164',
'label':'SIP on JRC2018Unisex adult brain',
'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2164/VFB_00101567/thumbnail.png',
'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2164/VFB_00101567/thumbnailT.png',
'index':30,
'center':None,
'type_label':'superior intermediate protocerebrum',
'type_id':'FBbt_00045032'
},
31:{
'id':'VFB_00102170',
'label':'SMP on JRC2018Unisex adult brain',
'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2170/VFB_00101567/thumbnail.png',
'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2170/VFB_00101567/thumbnailT.png',
'index':31,
'center':None,
'type_label':'superior medial protocerebrum',
'type_id':'FBbt_00007055'
},
32:{
'id':'VFB_00102171',
'label':'CRE on JRC2018Unisex adult brain',
'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2171/VFB_00101567/thumbnail.png',
'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2171/VFB_00101567/thumbnailT.png',
'index':32,
'center':None,
'type_label':'adult crepine',
'type_id':'FBbt_00045037'
},
33:{
'id':'VFB_00102174',
'label':'ROB on JRC2018Unisex adult brain',
'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2174/VFB_00101567/thumbnail.png',
'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2174/VFB_00101567/thumbnailT.png',
'index':33,
'center':None,
'type_label':'adult round body',
'type_id':'FBbt_00048509'
},
34:{
'id':'VFB_00102175',
'label':'RUB on JRC2018Unisex adult brain',
'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2175/VFB_00101567/thumbnail.png',
'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2175/VFB_00101567/thumbnailT.png',
'index':34,
'center':None,
'type_label':'rubus',
'type_id':'FBbt_00040038'
},
35:{
'id':'VFB_00102176',
'label':'SCL on JRC2018Unisex adult brain',
'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2176/VFB_00101567/thumbnail.png',
'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2176/VFB_00101567/thumbnailT.png',
'index':35,
'center':None,
'type_label':'superior clamp',
'type_id':'FBbt_00040048'
},
36:{
'id':'VFB_00102179',
'label':'ICL on JRC2018Unisex adult brain',
'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2179/VFB_00101567/thumbnail.png',
'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2179/VFB_00101567/thumbnailT.png',
'index':36,
'center':None,
'type_label':'inferior clamp',
'type_id':'FBbt_00040049'
},
37:{
'id':'VFB_00102185',
'label':'IB on JRC2018Unisex adult brain',
'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2185/VFB_00101567/thumbnail.png',
'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2185/VFB_00101567/thumbnailT.png',
'index':37,
'center':None,
'type_label':'inferior bridge',
'type_id':'FBbt_00040050'
},
38:{
'id':'VFB_00102190',
'label':'ATL on JRC2018Unisex adult brain',
'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2190/VFB_00101567/thumbnail.png',
'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2190/VFB_00101567/thumbnailT.png',
'index':38,
'center':None,
'type_label':'antler',
'type_id':'FBbt_00045039'
},
39:{
'id':'VFB_00102201',
'label':'AL on JRC2018Unisex adult brain',
'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2201/VFB_00101567/thumbnail.png',
'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2201/VFB_00101567/thumbnailT.png',
'index':39,
'center':None,
'type_label':'adult antennal lobe',
'type_id':'FBbt_00007401'
},
40:{
'id':'VFB_00102212',
'label':'VES on JRC2018Unisex adult brain',
'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2212/VFB_00101567/thumbnail.png',
'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2212/VFB_00101567/thumbnailT.png',
'index':40,
'center':None,
'type_label':'vest',
'type_id':'FBbt_00040041'
},
41:{
'id':'VFB_00102213',
'label':'EPA on JRC2018Unisex adult brain',
'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2213/VFB_00101567/thumbnail.png',
'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2213/VFB_00101567/thumbnailT.png',
'index':41,
'center':None,
'type_label':'epaulette',
'type_id':'FBbt_00040040'
},
42:{
'id':'VFB_00102214',
'label':'GOR on JRC2018Unisex adult brain',
'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2214/VFB_00101567/thumbnail.png',
'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2214/VFB_00101567/thumbnailT.png',
'index':42,
'center':None,
'type_label':'gorget',
'type_id':'FBbt_00040039'
},
43:{
'id':'VFB_00102215',
'label':'SPS on JRC2018Unisex adult brain',
'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2215/VFB_00101567/thumbnail.png',
'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2215/VFB_00101567/thumbnailT.png',
'index':43,
'center':None,
'type_label':'superior posterior slope',
'type_id':'FBbt_00045040'
},
44:{
'id':'VFB_00102218',
'label':'IPS on JRC2018Unisex adult brain',
'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2218/VFB_00101567/thumbnail.png',
'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2218/VFB_00101567/thumbnailT.png',
'index':44,
'center':None,
'type_label':'inferior posterior slope',
'type_id':'FBbt_00045046'
},
45:{
'id':'VFB_00102271',
'label':'SAD on JRC2018Unisex adult brain',
'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2271/VFB_00101567/thumbnail.png',
'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2271/VFB_00101567/thumbnailT.png',
'index':45,
'center':None,
'type_label':'saddle',
'type_id':'FBbt_00045048'
},
46:{
'id':'VFB_00102273',
'label':'AMMC on JRC2018Unisex adult brain',
'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2273/VFB_00101567/thumbnail.png',
'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2273/VFB_00101567/thumbnailT.png',
'index':46,
'center':None,
'type_label':'antennal mechanosensory and motor center',
'type_id':'FBbt_00003982'
},
47:{
'id':'VFB_00102274',
'label':'FLA on JRC2018Unisex adult brain',
'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2274/VFB_00101567/thumbnail.png',
'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2274/VFB_00101567/thumbnailT.png',
'index':47,
'center':None,
'type_label':'flange',
'type_id':'FBbt_00045050'
},
48:{
'id':'VFB_00102275',
'label':'CAN on JRC2018Unisex adult brain',
'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2275/VFB_00101567/thumbnail.png',
'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2275/VFB_00101567/thumbnailT.png',
'index':48,
'center':None,
'type_label':'cantle',
'type_id':'FBbt_00045051'
},
49:{
'id':'VFB_00102276',
'label':'PRW on JRC2018Unisex adult brain',
'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2276/VFB_00101567/thumbnail.png',
'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2276/VFB_00101567/thumbnailT.png',
'index':49,
'center':None,
'type_label':'prow',
'type_id':'FBbt_00040051'
},
50:{
'id':'VFB_00102280',
'label':'GNG on JRC2018Unisex adult brain',
'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2280/VFB_00101567/thumbnail.png',
'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2280/VFB_00101567/thumbnailT.png',
'index':50,
'center':None,
'type_label':'adult gnathal ganglion',
'type_id':'FBbt_00014013'
},
59:{
'id':'VFB_00102281',
'label':'GA on JRC2018Unisex adult brain',
'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2281/VFB_00101567/thumbnail.png',
'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2281/VFB_00101567/thumbnailT.png',
'index':59,
'center':None,
'type_label':'gall',
'type_id':'FBbt_00040060'
},
94:{
'id':'VFB_00102282',
'label':'NO on JRC2018Unisex adult brain',
'thumbnail':'https://www.virtualflybrain.org/data/VFB/i/0010/2282/VFB_00101567/thumbnail.png',
'thumbnail_transparent':'https://www.virtualflybrain.org/data/VFB/i/0010/2282/VFB_00101567/thumbnailT.png',
'index':94,
'center':None,
'type_label':'nodulus',
'type_id':'FBbt_00003680'
}
},
'Licenses':{
0:{
'iri':'http://virtualflybrain.org/reports/VFBlicense_CC_BY_NC_SA_4_0',
'short_form':'VFBlicense_CC_BY_NC_SA_4_0',
'label':'CC-BY-NC-SA_4.0',
'icon':'http://mirrors.creativecommons.org/presskit/buttons/88x31/png/by-nc-sa.png',
'source':'JRC 2018 templates & ROIs',
'source_iri':'http://virtualflybrain.org/reports/JRC2018'
}
}
}
Queries:
vfb.get_instances('FBbt_00003748', return_dataframe=False)
{
'headers':{
'id':{
'title':'Add',
'type':'selection_id',
'order':-1
},
'label':{
'title':'Name',
'type':'markdown',
'order':0,
'sort':{
0:'Asc'
}
},
'parent':{
'title':'Parent Type',
'type':'markdown',
'order':1
},
'template':{
'title':'Template',
'type':'markdown',
'order':4
},
'tags':{
'title':'Gross Types',
'type':'tags',
'order':3
},
'source':{
'title':'Data Source',
'type':'markdown',
'order':5
},
'source_id':{
'title':'Data Source',
'type':'markdown',
'order':6
},
'dataset':{
'title':'Dataset',
'type':'markdown',
'order':7
},
'license':{
'title':'License',
'type':'markdown',
'order':8
},
'thumbnail':{
'title':'Thumbnail',
'type':'markdown',
'order':9
}
},
'rows':[
{
'id':'VFB_00102107',
'label':'[ME on JRC2018Unisex adult brain](VFB_00102107)',
'tags':'Nervous_system|Adult|Visual_system|Synaptic_neuropil_domain',
'parent':'[medulla](FBbt_00003748)',
'source':'',
'source_id':'',
'template':'[JRC2018Unisex](VFB_00101567)',
'dataset':'[JRC 2018 templates & ROIs](JRC2018)',
'license':'',
'thumbnail':"[](VFB_00101567,VFB_00102107)"
},
{
'id':'VFB_00101385',
'label':'[ME(R) on JRC_FlyEM_Hemibrain](VFB_00101385)',
'tags':'Nervous_system|Adult|Visual_system|Synaptic_neuropil_domain',
'parent':'[medulla](FBbt_00003748)',
'source':'',
'source_id':'',
'template':'[JRC_FlyEM_Hemibrain](VFB_00101384)',
'dataset':'[JRC_FlyEM_Hemibrain painted domains](Xu2020roi)',
'license':'',
'thumbnail':"[ on JRC_FlyEM_Hemibrain aligned to JRC_FlyEM_Hemibrain')](VFB_00101384,VFB_00101385)"
},
{
'id':'VFB_00030810',
'label':'[medulla on adult brain template Ito2014](VFB_00030810)',
'tags':'Nervous_system|Visual_system|Adult|Synaptic_neuropil_domain',
'parent':'[medulla](FBbt_00003748)',
'source':'',
'source_id':'',
'template':'[adult brain template Ito2014](VFB_00030786)',
'dataset':'[BrainName neuropils and tracts - Ito half-brain](BrainName_Ito_half_brain)',
'license':'',
'thumbnail':"[](VFB_00030786,VFB_00030810)"
},
{
'id':'VFB_00030624',
'label':'[medulla on adult brain template JFRC2](VFB_00030624)',
'tags':'Nervous_system|Visual_system|Adult|Synaptic_neuropil_domain',
'parent':'[medulla](FBbt_00003748)',
'source':'',
'source_id':'',
'template':'[adult brain template JFRC2](VFB_00017894)',
'dataset':'[BrainName neuropils on adult brain JFRC2 (Jenett, Shinomya)](JenettShinomya_BrainName)',
'license':'',
'thumbnail':"[](VFB_00017894,VFB_00030624)"
}
],
'count':4
}
vfb.get_templates(return_dataframe=False)
{
'headers':{
'id':{
'title':'Add',
'type':'selection_id',
'order':-1
},
'order':{
'title':'Order',
'type':'numeric',
'order':1,
'sort':{
0:'Asc'
}
},
'name':{
'title':'Name',
'type':'markdown',
'order':1,
'sort':{
1:'Asc'
}
},
'tags':{
'title':'Tags',
'type':'tags',
'order':2
},
'thumbnail':{
'title':'Thumbnail',
'type':'markdown',
'order':9
},
'dataset':{
'title':'Dataset',
'type':'metadata',
'order':3
},
'license':{
'title':'License',
'type':'metadata',
'order':4
}
},
'rows':[
{
'id':'VFB_00101567',
'order':1,
'name':'[JRC2018Unisex](VFB_00101567)',
'tags':'Nervous_system|Adult',
'thumbnail':"[](VFB_00101567)",
'dataset':'[JRC 2018 templates & ROIs](JRC2018)',
'license':'[CC-BY-NC-SA_4.0](VFBlicense_CC_BY_NC_SA_4_0)'
},
{
'id':'VFB_00200000',
'order':2,
'name':'[JRC2018UnisexVNC](VFB_00200000)',
'tags':'Nervous_system|Adult|Ganglion',
'thumbnail':"[](VFB_00200000)",
'dataset':'[JRC 2018 templates & ROIs](JRC2018)',
'license':'[CC-BY-NC-SA_4.0](VFBlicense_CC_BY_NC_SA_4_0)'
},
{
'id':'VFB_00017894',
'order':3,
'name':'[adult brain template JFRC2](VFB_00017894)',
'tags':'Nervous_system|Adult',
'thumbnail':"[](VFB_00017894)",
'dataset':'[FlyLight - GMR GAL4 collection (Jenett2012)](Jenett2012)',
'license':'[CC-BY-NC-SA_4.0](VFBlicense_CC_BY_NC_SA_4_0)'
},
{
'id':'VFB_00101384',
'order':4,
'name':'[JRC_FlyEM_Hemibrain](VFB_00101384)',
'tags':'Nervous_system|Adult',
'thumbnail':"[](VFB_00101384)",
'dataset':'[JRC_FlyEM_Hemibrain painted domains](Xu2020roi)',
'license':'[CC-BY_4.0](VFBlicense_CC_BY_4_0)'
},
{
'id':'VFB_00050000',
'order':5,
'name':'[L1 larval CNS ssTEM - Cardona/Janelia](VFB_00050000)',
'tags':'Nervous_system|Larva',
'thumbnail':"[](VFB_00050000)",
'dataset':'[Neurons involved in larval fast escape response - EM (Ohyama2016)](Ohyama2015)',
'license':'[CC-BY-SA_4.0](VFBlicense_CC_BY_SA_4_0)'
},
{
'id':'VFB_00050000',
'order':5,
'name':'[L1 larval CNS ssTEM - Cardona/Janelia](VFB_00050000)',
'tags':'Nervous_system|Larva',
'thumbnail':"[](VFB_00050000)",
'dataset':'[larval hugin neurons - EM (Schlegel2016)](Schlegel2016)',
'license':'[CC-BY-SA_4.0](VFBlicense_CC_BY_SA_4_0)'
},
{
'id':'VFB_00049000',
'order':6,
'name':'[L3 CNS template - Wood2018](VFB_00049000)',
'tags':'Nervous_system|Larva',
'thumbnail':"[](VFB_00049000)",
'dataset':'[L3 Larval CNS Template (Truman2016)](Truman2016)',
'license':'[CC-BY-SA_4.0](VFBlicense_CC_BY_SA_4_0)'
},
{
'id':'VFB_00100000',
'order':7,
'name':'[adult VNS template - Court2018](VFB_00100000)',
'tags':'Nervous_system|Adult|Ganglion',
'thumbnail':"[](VFB_00100000)",
'dataset':'[Adult VNS neuropils (Court2017)](Court2017)',
'license':'[CC-BY-SA_4.0](VFBlicense_CC_BY_SA_4_0)'
},
{
'id':'VFB_00030786',
'order':8,
'name':'[adult brain template Ito2014](VFB_00030786)',
'tags':'Nervous_system|Adult',
'thumbnail':"[](VFB_00030786)",
'dataset':'[BrainName neuropils and tracts - Ito half-brain](BrainName_Ito_half_brain)',
'license':'[CC-BY-SA_4.0](VFBlicense_CC_BY_SA_4_0)'
},
{
'id':'VFB_00110000',
'order':9,
'name':'[Adult Head (McKellar2020)](VFB_00110000)',
'tags':'Adult|Anatomy',
'thumbnail':"[')](VFB_00110000)",
'dataset':'[Split-GAL4 lines from McKellar et al., 2020](McKellar2020)',
'license':'[CC-BY-SA_4.0](VFBlicense_CC_BY_SA_4_0)'
},
{
'id':'VFB_00120000',
'order':10,
'name':'[Adult T1 Leg (Kuan2020)](VFB_00120000)',
'tags':'Adult|Anatomy',
'thumbnail':"[')](VFB_00120000)",
'dataset':'[Millimeter-scale imaging of a Drosophila leg at single-neuron resolution](Kuan2020)',
'license':'[CC-BY_4.0](VFBlicense_CC_BY_4_0)'
}
],
'count':10
}
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