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Visualize (multiple) sequence alignment (MSA)

Project description

Plot overview of Multiple Sequence Alignments (MSA)

Usage:

######################################
# vizqes
######################################
usage:
    vizqes -f multifasta alignment
options:
     -f, --fasta=FILE    multifasta alignment (eg. "align.fas")

   [ -o, --outfile=STR   output file (png, eps, jpg) ]
   [ -c, --colorscheme=STR STR in ("default", "clustal", "lesk",
                                   "cinema", "maeditor", "dna",
                                   "aacid") ]
   [ -x, --boxwidth=INT draw INT pixels per residue (x direction) ]
   [ -y, --boxheight=INT draw INT pixels per residue (y direction) ]

adding identifiers:
   [ -s, --show_names     also draw sequence ids ]
   [ -g, --show_grouping] draw colors for match, mismatch, gap, and gapped matches
                          (ignores colorscheme) ]
   [ -F, --font_file=FONT path to truetype font (monospace fonts recommended) ]

Project details


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This version
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0.9.2

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0.9.1

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Filename, size & hash SHA256 hash help File type Python version Upload date
vizqes-0.9.2-py2.7.egg (318.0 kB) Copy SHA256 hash SHA256 Egg 2.7 Feb 8, 2015
vizqes-0.9.2.tar.gz (309.3 kB) Copy SHA256 hash SHA256 Source None Feb 8, 2015

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