volumetric data and experiment manager
Project description
vodex : Volumetric Data and Experiment manager
Vodex is a Python library for dealing with volumetric movies , written as a sequence of slices and split across multiple tif files. It will keep track of full volumes / particular z-slices, making it easy to do requests like " give me all z slices # 23 in the whole movie" , or " give me volumes # 6, 85 and 54 ", regardless of whether these volumes are split between multiple tif files, or not. It can also link particular experimental conditions to certain volumes/slices, making it easy to request something like " give me all full volumes when I was shining the green light " or " give me all slices # 16 after we have administered the drug ".
Installation
Use the package manager pip to install vodex.
pip install vodex
Usage
Please see notebooks/examples on github.
Contributing
Pull requests are welcome, but for now it's only me working on this project, so it might take me some time. For major changes, please open an issue first to discuss what you would like to change.
Please make sure to update tests as appropriate.
License
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
