Voxcell is a small library to handle probability distributions that have a spatial component and to use them to build collection of cells in space.
Project description
Overview
Libraries for:
handling “traits fields” and collections and the logic to assign them.
volumetric data within NRRD files
Cell collection access / writer.
to build, transform and handle fields of vectors and orientations.
querying Region hierarchy tree, such as the one available from the Allen Institute for Brain Science (AIBS): Mouse Brain Atlas Ontology’s StructureGraph (aka 1.json).
Installation
git clone https://github.com/BlueBrain/voxcell
cd voxcell
pip install -e .Acknowledgements
The development of this software was supported by funding to the Blue Brain Project, a research center of the École polytechnique fédérale de Lausanne (EPFL), from the Swiss government’s ETH Board of the Swiss Federal Institutes of Technology.
For license and authors, see LICENSE.txt and AUTHORS.txt respectively.
Copyright © 2022 Blue Brain Project/EPFL
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