USDA APHIS Veterinary Services (VS) Mycobacterium tuberculosis complex, mainly M. bovis, and Brucella sp. SNP pipeline. Genotyping from whole genome sequence (WGS) outputting BAM, VCF, SNP tables and phylogentic trees.

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License: MIT

Author: Adam Koziol

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https://usda-vs.github.io/vSNP/

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License: MIT

Author: Adam Koziol


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0.0.21

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This version

0.0.1

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