Utilites for the mapping pipeline from WASP
Project description
wasp_map
Utilites for the mapping pipeline from WASP
Installation
Step 0 (optional): If you wish to specify the locations of the Anaconda3
and/or WASP installations, you can do so through the environment variables
WASP_MAP_ANACONDA_DIR
and WASP_MAP_DIR
. For example, you could append this
to your .bash_profile
:
export WASP_MAP_ANACONDA_DIR=~/anaconda3
export WASP_MAP_DIR=~/WASP
If these environment variables point to already-existing installations of
Anaconda3 and WASP, respectively, then you can skip step 2 (running
wasp_map-download
).
If you also set environment variable LD_LIBRARY_PATH
appropriately, you can
skip step 3 (running wasp_map-set-ldlib
). For example:
export WASP_MAP_ANACONDA_DIR=~/anaconda3
export WASP_MAP_DIR=~/WASP
export LD_LIBRARY_PATH=${WASP_MAP_ANACONDA_DIR}/lib:$LD_LIBRARY_PATH
Step 1: install the python package via pip3
:
pip3 install wasp_map
or
pip3 install --user wasp_map
Step 2: Once the python package is installed, run
wasp_map-download
and follow the prompts. Anaconda3 and/or WASP will be installed, if necessary.
Step 3: Next, run
wasp_map-set-ldlib
and follow the instruction. It will be something like:
Run the following `export` command, or append it to your .bashrc, .profile, or .bash_profile:
export LD_LIBRARY_PATH=/home/aaylward/.local/lib/python3.6/site-packages/wasp_map/anaconda3/lib:$LD_LIBRARY_PATH
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