Efficient and scalable image registration (alignment) for multiplexed imaging data
Project description
WassersteinWormhole for Python3
Embedding point-clouds by presering Wasserstein distancse with the Wormhole.
This implementation is written in Python3 and relies on FLAX, JAX, JAX-OTT.
To install JAX, simply run the command:
pip install --upgrade "jax[cuda11_pip]" -f https://storage.googleapis.com/jax-releases/jax_cuda_releases.html
And to install WassersteinWormhole along with the rest of the requirements:
pip install WassersteinWormhole
And running the Womrhole on your own set of point-clouds is as simple as:
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