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  • Requires: Python >=3.7
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Project description

WebGestaltPy

A python package containing bindings to the underlying Rust library webgestalt_rust.

Features

  • Compute GSEA and ORA
  • Run a meta-analysis combining multiple lists
  • Combine multiple lists into a single analysis type

The output of the python package is the values. This does not generate any HTML reports. For reports, please use the R package.

Installation

pip install webgestaltpy

Development

WebGestaltPy uses maturin and rye to build the full project. To build WebGestaltPy, run the following commands

git clone https://github.com/bzhanglab/webgestaltpy.git
cd webgestaltpy
rye sync # download correct python version and install dependencies
rye tools install maturin
rye run python -m ensurepip --default-pip # makes sure maturin can run correctly
rye shell # initialize shell so the python command executes the local version
maturin develop # add -r to build and install the full release version of the rust library.
python test.py # run the test script

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This version

0.3.1

0.3.0

0.2.0

0.1.1

0.1.0

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