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Project description
WebGestaltPy
A python package containing bindings to the underlying Rust library webgestalt_rust.
Features
- Compute GSEA and ORA
- Run a meta-analysis combining multiple lists
- Combine multiple lists into a single analysis type
The output of the python package is the values. This does not generate any HTML reports. For reports, please use the R package.
Installation
pip install webgestaltpy
Development
WebGestaltPy uses maturin and rye to build the full project. To build WebGestaltPy, run the following commands
git clone https://github.com/bzhanglab/webgestaltpy.git
cd webgestaltpy
rye sync # download correct python version and install dependencies
rye tools install maturin
rye run python -m ensurepip --default-pip # makes sure maturin can run correctly
rye shell # initialize shell so the python command executes the local version
maturin develop # add -r to build and install the full release version of the rust library.
python test.py # run the test script
Project details
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MD5 | a8033089ee4203177cbd88843ba13b8c |
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MD5 | 40f975b2cceca488c33ea0ff6aeff508 |
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MD5 | 1a8e269fc23ef8bb82c221e849c56068 |
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MD5 | 3358e50423eae413c7e3094f6d11c32a |
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MD5 | 55b886068ebe42e43485081a67a0e698 |
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MD5 | 349813b849237b04ee34c2abeec2de96 |
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MD5 | 345f24f65890e38275856dfef92fa69a |
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MD5 | 2bf2de9976b2a8dcc3045454033d8049 |
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