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Project description
WebGestaltPy
A python package containing bindings to the underlying Rust library webgestalt_rust.
Features
- Compute GSEA and ORA
- Run a meta-analysis combining multiple lists
- Combine multiple lists into a single analysis type
The output of the python package is the values. This does not generate any HTML reports. For reports, please use the R package.
Installation
pip install webgestaltpy
Development
WebGestaltPy uses maturin and rye to build the full project. To build WebGestaltPy, run the following commands
git clone https://github.com/bzhanglab/webgestaltpy.git
cd webgestaltpy
rye sync # download correct python version and install dependencies
rye tools install maturin
rye run python -m ensurepip --default-pip # makes sure maturin can run correctly
rye shell # initialize shell so the python command executes the local version
maturin develop # add -r to build and install the full release version of the rust library.
python test.py # run the test script
Project details
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MD5 | 5168659cacfc260c29d22c6952aa7337 |
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MD5 | f011a27336642798df2d2d238a5dd83e |
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