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WebLogo3 : Sequence Logos Redrawn

Project description

===============================================================================

WebLogo

http://code.google.com/p/weblogo/
===============================================================================

WebLogo is a tool for creating sequence logos from biological sequence
alignments. It can be run on the command line, as a standalone webserver, as a
CGI webapp, or as a python library.

Please consult the manual for installation instructions and more information:
(Also located in the weblogo/weblogo_htdocs subdirectory.)

http://bespoke.lbl.gov/weblogo/manual.html

For help on the command line interface run
./weblogo.py --help

To build a simple logo run
./weblogo.py < cap.fa > logo0.eps

To run as a standalone webserver at localhost:8080
./weblogo.py --server

To create a logo in python code:
>>> seqs = seq_io.read( fin)
>>> data = LogoData(data)
>>> options = LogoOptions()
>>> options.title = "A Logo Title"
>>> format = LogoFormat(data, options)
>>> logo = format( data, format)


WebLogo makes extensive use of the corebio python toolkit for computational biology. (http://code.google.com/p/corebio)

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Distribution and Modification
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This package is distributed under the new BSD Open Source License.
Please see the LICENSE.txt file for details on copyright and licensing.

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