Skip to main content

File format for 96-well plate layouts.

Project description

Many medium-throughput experiments produce data in 24-, 96-, or 384-well plate format. However, it can be a challenge to keep track of which wells (e.g. A1, B2, etc.) correspond to which experimental conditions (e.g. genotype, drug concentration, replicate number, etc.) for large numbers of experiments. It can also be a challenge to write analysis scripts flexible enough to handle the different plate layouts that will inevitably come up as more and more experiments are run.

The wellmap package solves these challenges by introducing a TOML-based file format that succinctly describes the organization of wells on plates. The file format is designed to be human-readable and -writable, so it can serve as a standalone digital record. The file format can also be easily parsed in python and R to help write analysis scripts that will work regardless of how you (or your collaborators) organize wells on your plates.

https://img.shields.io/pypi/v/wellmap.svg https://img.shields.io/pypi/pyversions/wellmap.svg https://img.shields.io/badge/R-3.0,4.0-blue.svg https://readthedocs.org/projects/wellmap/badge/?version=latest https://img.shields.io/github/workflow/status/kalekundert/wellmap/Test%20and%20release/master https://img.shields.io/coveralls/kalekundert/wellmap.svg

Documentation

See the complete documentation here.

docs/manuscript/figures/well_groups.svg

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Files for wellmap, version 3.0.0
Filename, size File type Python version Upload date Hashes
Filename, size wellmap-3.0.0-py2.py3-none-any.whl (20.5 kB) File type Wheel Python version py2.py3 Upload date Hashes View
Filename, size wellmap-3.0.0.tar.gz (5.1 MB) File type Source Python version None Upload date Hashes View

Supported by

AWS AWS Cloud computing Datadog Datadog Monitoring DigiCert DigiCert EV certificate Facebook / Instagram Facebook / Instagram PSF Sponsor Fastly Fastly CDN Google Google Object Storage and Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Salesforce Salesforce PSF Sponsor Sentry Sentry Error logging StatusPage StatusPage Status page