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Lens

manage a colony of distributed whole-cell agents

Usage

  1. Install and start your Zookeeper and Kafka servers per instructions in CovertLab/wcEcoli/agent/README.md.

  2. Start the Shepherd server to manage agent processes:

    > lein run

  3. Start the Lens visualization server:

    > lein run -m shepherd.lens

  4. Open a web browser onto Lens http://localhost:33332.

    • The Run/Pause button controls the simulation clock.

    • The pop-up menu picks which molecular concentration field to view. "GLC[p]" and "CARBON-MONOXIDE[p]" are the most interesting.

  5. Create agents per the instructions in CovertLab/wcEcoli/environment/README.md.

License

Copyright © 2018 Covert Lab

Distributed under the Eclipse Public License either version 1.0 or (at your option) any later version.

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