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Ruleset covering algorithms for explainable machine learning

Project description

wittgenstein

And is there not also the case where we play and--make up the rules as we go along?
-Ludwig Wittgenstein

the duck-rabbit

Summary

This package implements two interpretable coverage-based ruleset algorithms: IREP and RIPPERk, as well as additional features for model interpretation.

Performance is similar to sklearn's DecisionTree CART implementation (see Performance Tests).

For explanation of the algorithms, see my article in Towards Data Science, or the papers below, under Useful References.

Installation

To install, use

$ pip install wittgenstein

To uninstall, use

$ pip uninstall wittgenstein

Requirements

  • pandas
  • numpy
  • python version>=3.6

Usage

Usage syntax is similar to sklearn's.

Training

Once you have loaded and split your data...

>>> import pandas as pd
>>> df = pd.read_csv(dataset_filename)
>>> from sklearn.model_selection import train_test_split # Or any other mechanism you want to use for data partitioning
>>> train, test = train_test_split(df, test_size=.33)

Use the fit method to train a RIPPER or IREP classifier:

>>> import wittgenstein as lw
>>> ripper_clf = lw.RIPPER() # Or irep_clf = lw.IREP() to build a model using IREP
>>> ripper_clf.fit(df, class_feat='Poisonous/Edible', pos_class='p') # Or pass X and y data to .fit
>>> ripper_clf
<RIPPER(max_rules=None, random_state=2, max_rule_conds=None, verbosity=0, max_total_conds=None, k=2, prune_size=0.33, dl_allowance=64, n_discretize_bins=10) with fit ruleset> # Hyperparameter details available in the docstrings and TDS article below

Access the underlying trained model with the ruleset_ attribute, or output it with out_model(). A ruleset is a disjunction of conjunctions -- 'V' represents 'or'; '^' represents 'and'.

In other words, the model predicts positive class if any of the inner-nested condition-combinations are all true:

>>> ripper_clf.out_model() # or ripper_clf.ruleset_
[[Odor=f] V
[Gill-size=n ^ Gill-color=b] V
[Gill-size=n ^ Odor=p] V
[Odor=c] V
[Spore-print-color=r] V
[Stalk-surface-below-ring=y ^ Stalk-surface-above-ring=k] V
[Habitat=l ^ Cap-color=w] V
[Stalk-color-above-ring=y]]

IREP models tend be higher bias, RIPPER's higher variance.

Scoring

To score a trained model, use the score function:

>>> X_test = test.drop('Poisonous/Edible', axis=1)
>>> y_test = test['Poisonous/Edible']
>>> ripper_clf.score(X_test, y_test)
0.9985686906328078

Default scoring metric is accuracy. You can pass in alternate scoring functions, including those available through sklearn:

>>> from sklearn.metrics import precision_score, recall_score
>>> precision = clf.score(X_test, y_test, precision_score)
>>> recall = clf.score(X_test, y_test, recall_score)
>>> print(f'precision: {precision} recall: {recall}')
precision: 0.9914..., recall: 0.9953...

Prediction

To perform predictions, use predict:

>>> ripper_clf.predict(new_data)[:5]
[True, True, False, True, False]

Predict class probabilities with predict_proba:

>>> ripper_clf.predict_proba(test)
# Pairs of negative and positive class probabilities
array([[0.01212121, 0.98787879],
       [0.01212121, 0.98787879],
       [0.77777778, 0.22222222],
       [0.2       , 0.8       ],
       ...

We can also ask our model to tell us why it made each positive prediction using give_reasons:

>>> ripper_clf.predict(new_data[:5], give_reasons=True)
([True, True, False, True, True]
[<Rule [physician-fee-freeze=n]>],
[<Rule [physician-fee-freeze=n]>,
  <Rule [synfuels-corporation-cutback=y^adoption-of-the-budget-resolution=y^anti-satellite-test-ban=n]>], # This example met multiple sufficient conditions for a positive prediction
[],
[<Rule object: [physician-fee-freeze=n]>],
[])

For individual rule-level statistics, use .rule_stats. It will return a pandas Dataframe containing basic statistics, as well as a list of DataFrames for each rule, indexed by the rules' indices.

>>> stats, examples = ripper_clf.rule_stats(X_train, y_train, n_examples=3)
>>> stats
rule_idx rule_str coverage n_covered precision recall f1
0 0 [Proline=>1048.0] 0.203008 27 1 0.613636 0.760563
1 1 [Proline=736.0-1048.0^Flavanoids=>2.98] 0.0601504 8 1 0.181818 0.307692
2 2 [Proline=736.0-1048.0^Colorintensity=3.95-5.3] 0.0526316 7 1 0.159091 0.27451
3 3 [Hue=1.04-1.16^Alcohol=13.21-13.77] 0.0451128 6 1 0.136364 0.24
>>> examples
Alcohol Malic acid Ash Alcalinity of ash Magnesium Total phenols Flavanoids Nonflavanoid phenols Proanthocyanins Color intensity Hue OD280/OD315 of diluted wines Proline Class
33 13.21 - 13.77 <1.55 >2.6 18.5 - 20.0 >112.0 >2.89 2.44 - 2.98 >0.48 1.14 - 1.43 5.3 - 6.78 >1.16 2.93 - 3.29 >1048.0 1
34 13.21 - 13.77 1.76 - 2.16 >2.6 18.5 - 20.0 102.0 - 112.0 2.0 - 2.5 2.44 - 2.98 0.26 - 0.3 1.43 - 1.66 3.95 - 5.3 1.04 - 1.16 2.52 - 2.93 >1048.0 1
53 >13.77 1.76 - 2.16 >2.6 16.8 - 18.5 >112.0 >2.89 2.44 - 2.98 0.39 - 0.48 1.66 - 2.0 5.3 - 6.78 1.04 - 1.16 2.93 - 3.29 >1048.0 1

Model selection

wittgenstein is compatible with sklearn model_selection tools such as cross_val_score and GridSearchCV, as well as ensemblers like StackingClassifier.

Cross validation:

>>> # First dummify your categorical features and booleanize your class values to make sklearn happy
>>> X_train = pd.get_dummies(X_train, columns=X_train.select_dtypes('object').columns)
>>> y_train = y_train.map(lambda x: 1 if x=='p' else 0)
>>> cross_val_score(ripper_clf, X_train, y_train)

Grid search:

>>> from sklearn.model_selection import GridSearchCV
>>> param_grid = {"prune_size": [0.33, 0.5], "k": [1, 2]}
>>> grid = GridSearchCV(estimator=ripper, param_grid=param_grid)
>>> grid.fit(X_train, y_train)

Ensemble:

>>> from sklearn.ensemble import StackingClassifier
>>> from sklearn.tree import DecisionTreeClassifier
>>> from sklearn.naive_bayes import GaussianNB
>>> from sklearn.linear_model import LogisticRegression
>>> tree = DecisionTreeClassifier(random_state=42)
>>> nb = GaussianNB()
>>> estimators = [("rip", ripper_clf), ("tree", tree), ("nb", nb)]
>>> ensemble_clf = StackingClassifier(estimators=estimators, final_estimator=LogisticRegression())
>>> ensemble_clf.fit(X_train, y_train)

Multiclass

For multiclass tasks, use in combination with sklearn OneVsRestClassifier:

>>> from sklearn.multiclass import OneVsRestClassifier
>>> rip = RIPPER()
>>> clf = OneVsRestClassifier(rip)
>>> clf.fit(X, y)

Defining and altering models

You can directly specify a new model, modify a preexisting model, or train from a preexisting model -- whether to take into account subject matter expertise, to create a baseline for scoring, or for insight into what the model is doing.

To specify a new model, use init_ruleset:

>>> ripper_clf = RIPPER(random_state=42)
>>> ripper_clf.init_ruleset("[[Cap-shape=x^Cap-color=n] V [Odor=c] V ...]", class_feat=..., pos_class=...)
>>> ripper_clf.predict(df)
...

To modify a preexisting model, use add_rule, replace_rule, remove_rule, or insert_rule. To alter a model by index, use replace_rule_at, remove_rule_at, or insert_rule_at:

>>> ripper_clf.replace_rule_at(1, '[Habitat=l]')
>>> ripper_clf.insert_rule(insert_before_rule='[Habitat=l]', new_rule='[Gill-size=n ^ Gill-color=b]')
>>> ripper_clf.out_model()
[[delicious=y^spooky-looking=y] V
[Gill-size=n ^ Gill-color=b] V
[Habitat=l]]

To specify a starting point for training, use initial_model when calling fit:

>>> ripper_clf.fit(
>>>   X_train,
>>>   y_train,
>>>   initial_model="[[delicious=y^spooky-looking=y] V [Odor=c]]")

Expected string syntax for a Ruleset is [<Rule1> V <Rule2> V ...], for a Rule [<Cond1>^<Cond2>^...], and for a Cond feature=value`. '^' represents 'and'; 'V' represents 'or'. (See the Training section above).

Interpreter models

Use the interpret module to interpret non-wittgenstein models. interpret_model generates a ruleset that approximates some black-box model by fitting a wittgenstein classifier to the predictions of the other model.

>>> import torch
>>> from torch import nn
>>> from wittgenstein.interpret import interpret_model, score_fidelity

# Define and train a PyTorch model
>>> class WineNet(nn.Module):
...     def __init__(self):
...         super().__init__()
...         self.net = nn.Sequential(
...             nn.Linear(n_feats, 32), nn.ReLU(),
...             nn.Linear(32, 1), nn.Sigmoid())
...     def forward(self, x):
...         return self.net(x)

>>> model = WineNet()
>>> # ... train model ...

# Provide a predict function to handle DataFrame → tensor → binary array conversion
>>> def torch_predict(X, model):
...     with torch.no_grad():
...         t = torch.tensor(X.values.astype(float), dtype=torch.float32)
...         return (model(t).squeeze() > 0.5).numpy()

# Fit a RIPPER interpreter to approximate the model's predictions
>>> rip = RIPPER(random_state=1)
>>> interpret_model(model=model, X=X_test, interpreter=rip, model_predict_function=torch_predict)
>>> rip.out_model()
[[Colorintensity=5.68-7.24] V
[Proline=>1283.0] V
[Colorintensity=3.42-4.35]]

Use give_reasons=True to see which rules fired for each prediction.

>>> preds, reasons = rip.predict(X_test, give_reasons=True)
>>> reasons[:5]
[[], [], [], [<Rule [Colorintensity=5.68-7.24]>, <Rule [Proline=>1283.0]>], []]

Score how faithfully the interpreter fits the underlying model with score_fidelity.

>>> from sklearn.metrics import precision_score, recall_score, f1_score
>>> score_fidelity(
...    X_test,
...    rip,
...    model=model,
...    model_predict_function=torch_predict,
...    score_function=[precision_score, recall_score, f1_score])
[1.0, 0.75, 0.857]

NLP

Building lexical models is straightforward.

>>> # Extract texts and labels from the SMS Spam Collection dataset
>>> # ...
>>> from sklearn.feature_extraction.text import CountVectorizer
>>> vectorizer = CountVectorizer(binary=True, ngram_range=(1,3), min_df=5,
...   stop_words='english')
>>> X = vectorizer.fit_transform(texts).toarray() # convert from sparse to dense array
>>> rip = RIPPER()
>>> rip.fit(X, y=labels, pos_class='spam', feature_names=vectorizer.get_feature_names_out())
>>> rip.out_model() # Binary BoW model -- 1 indicates presence of token, 0 its absence
[[free=1 ^ txt=1] V
[claim=1] V
[mobile=1 ^ gt=0 ^ left=0 ^ free=1] V
[txt=1 ^ 150p=1] V
[txt=1 ^ win=1] V
[stop=1 ^ send=1] V
[mobile=1 ^ gt=0 ^ 50=1] V
[service=1 ^ dating=1] V
[reply=1 ^ video=1] V
[free=1 ^ nokia=1] V
[box=1 ^ po=1] V
...

You can also use interpret_model to distill an LM featurized with e.g. bag-of-words or TFIDF. The example below shows this approach with a neural net classifying whether recipes are Hungarian. (See interpreter models above).

>>> from sklearn.feature_extraction.text import TfidfVectorizer
>>> vectorizer = TfidfVectorizer(stop_words='english', min_df=5, ngram_range=(1, 2), max_features=1000)
>>> X = vectorizer.fit_transform([example['ingredients'] for example in data])
>>> feature_names = vectorizer.get_feature_names_out()

>>> # Train a neural net on the TFIDF features>>> # Use the same torch_predict function and training pattern from the interpreter models section above
>>> rip = RIPPER(n_discretize_bins=5, random_state=42)
>>> X_df = pd.DataFrame(X, columns=feature_names)
>>> interpret_model(model=LM_model, X=X_df, interpreter=rip, model_predict_function=torch_predict)
>>> rip.out_model()
[[hungarian=0.11-0.21] V
[paprika=0.12-0.19 ^ cut=>0.076] V
[hungarian=0.21-0.32] V
[sweetpaprika=0.091-0.18 ^ fresh=<0.043] V
[paprika=0.12-0.19 ^ beef=>0.057] V
[eggnoodles=>0.31]
...

wittgenstein-LLM collaboration

This demonstration combines LLM feature extraction with rule inference to produce both flexible predictions and explicit, interpretable rules. Results from this small-scale evaluation suggest this hybrid approach may improve classification performance while preserving the interpretability of rule-based models.

Using the CFPB consumer complaints dataset (400 train, 300 test, balanced classes), the task is to predict whether a consumer received monetary relief. The LLM extracts semantic features from complaint narratives — e.g., does the consumer describe a broken agreement, or cite specific legal statutes — which RIPPER then uses to learn interpretable rule combinations.

Accuracy and F1 scores on the held-out test set:

  • LLM judge (zero-shot): 0.56 / 0.23
  • LLM judge (10-shot): 0.69 / 0.58
  • RIPPER on structured features only: 0.61 / 0.50
  • RIPPER on structured + LLM-derived features (zero-shot): 0.79 / 0.75

The code can be adapted to other text classification tasks by defining new feature schemas and swapping in a different dataset.

The full example can be found in this notebook.

>>> text_features = {
    "describes_specific_transaction": {
        "description": "Does the consumer describe a specific financial transaction with concrete details (dates, amounts, payment method, confirmation numbers)?",
        "values": ["yes", "no"]
    },
    "payment_made_not_credited": {
        "description": "Does the consumer claim they made a payment that was not properly applied or acknowledged by the company?",
        "values": ["yes", "no"]
    },
    "disputes_specific_fee": {
        "description": "Does the consumer dispute a specific fee such as a late fee, interest charge, or cancellation fee as unfair or incorrect?",
        "values": ["yes", "no"]
    },
    ...

>>> FEATURIZATION_PROMPT = \
  """You are a feature extractor for consumer financial complaints about debt collection.
  Read the complaint and return a JSON object with ONLY these keys and ONLY the allowed values.

  {feature_schema}

  Return ONLY valid JSON. No explanation or commentary.

  COMPLAINT:
  {narrative}""".replace('{feature_schema}', str(text_features))

>>> # Use an LLM to extract features (see notebook for implementation)
>>> featurized_texts_X_train = await featurize_X_texts(X_train, text_feat)
>>> featurized_X_train = pd.concat(
...   [X_train.reset_index(drop=True), pd.DataFrame(featurized_texts_X_train)], axis=1)
# repeat for X_test

>>> # Train and score the ruleset classifier
>>> rip = RIPPER(random_state=42)
>>> rip.fit(featurized_X_train.drop(text_feat, axis=1), y_train)
>>> rip.out_model()
[[describes_specific_transaction=yes ^ disputes_specific_fee=yes ^ Issue=Attemptstocollectdebtnotowed] V
[complaint_narrative_style=personal_story ^ describes_specific_transaction=yes ^ requests_refund_or_reversal=yes ^ Sub-issue=Attemptedtocollectwrongamount ^ disputes_specific_fee=yes] V
[complaint_narrative_style=personal_story ^ describes_specific_transaction=yes ^ Issue=Communicationtactics] V
[describes_specific_transaction=yes ^ Sub-issue=Debtisnotyours] V
[complaint_narrative_style=personal_story ^ disputes_specific_fee=yes] V
[complaint_narrative_style=personal_story ^ product_or_service_not_received=yes] V
[disputes_specific_fee=yes] V
[Issue=Attemptstocollectdebtnotowed ^ describes_specific_transaction=yes ^ Sub-issue=Debtwasresultofidentitytheft ^ prior_attempts_to_resolve=multiple]]

>>> rip.score(featurized_X_test.drop(text_feat, axis=1), y_test), rip.score(featurized_X_test.drop(text_feat, axis=1), y_test, score_function=f1_score)
(0.7866666666666666, np.float64(0.7480314960629921))

Issues

If you encounter any issues, or if you have feedback or improvement requests for how wittgenstein could be more helpful for you, please post them to issues.

Useful references

Changelog

v0.3.5: 4/19/2026

  • Additional hyperparameters: min_rule_samples, min_ruleset_samples
  • NLP and LLM featurization examples
  • Add rule_stats method: per-rule precision, recall, F1, coverage, with optional example sampling
  • Add engine parameter to BinTransformer ('pandas' default, 'numpy' for faster discretization)
  • Minor bugfixes

v0.3.4: 4/3/2022

  • Improvements to predict_proba calculation, including smoothing

v0.3.2: 8/8/2021

  • Speedup for binning continuous features (~several orders of magnitude)
  • Add support for expert feedback: Ability to explicitly specify and alter models.
  • Add surrogate interpreter
  • Add support for non-pandas datasets (ex. numpy arrays)

v0.2.3: 5/21/2020

  • Minor bugfixes and optimizations

v0.2.0: 5/4/2020

  • Algorithmic optimizations to improve training speed (~10x - ~100x)
  • Support for training on iterable datatypes besides DataFrames, such as numpy arrays and python lists
  • Compatibility with sklearn ensembling metalearners and sklearn model_selection
  • .predict_proba returns probas in neg, pos order
  • Certain parameters (hyperparameters, random_state, etc.) should now be passed into IREP/RIPPER constructors rather than the .fit method.
  • Sundry bugfixes

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