wonambi 5.21

Tools for EEG, ECoG, iEEG, especially for sleep

Package to analysis EEG, ECoG and other electrophysiology formats. It allows for visualization of the results and for a GUI that can be used to score sleep stages.

Features

• Can read files of format:

  • Axon (.abf, ABF2 only)

  • BCI2000 (.dat)

  • Blackrock (.nev, .ns2, .ns3, .ns5)

  • Brain Vision (.vhdr, .vmrk, .eeg / .dat)

  • EEGLAB (.set, .set / .fdt)

  • European Data Format (.edf)

  • EGI MFF (.mff)

  • Fieldtrip (.mat)

  • mne FIFF (.fiff)

  • Moberg (“EEG,Composite,SampleSeries,Composite,MRIAmp,data”)

  • openephys (.continuous, .openephys)

• Interface for Sleep Scoring

• Computes frequency analysis (spectrogram), time-frequency analysis (short-time spectrogram, Morlet wavelet)

• Detection of spindles and slow waves

• Pure Python

Installation

Install wonambi by running:

pip install wonambi

See Installation for details

If you want to scroll recordings and do some sleep scoring (requires PyQt5)

wonambi

Run it!

From the command line, simply type:

wonambi

To open a dataset directly, add the full path to the file you want to open:

wonambi /home/me/sleep_recordings.edf

Documentation

See Documentation

Change Log

See Change Log

Requirements

• Python 3.6

• numpy

• scipy

Optional Requirements

• PyQt5 (optional for sleep scoring GUI)

• python-vlc (optional, to watch embedded movies)

• vispy (optional to plot 3D brain surfaces and electrodes)

• h5py (optional to read FieldTrip Matlab files)

• mne (optional, to export to mne FIFF files)

• nibabel (optional to read freesurfer)

• tensorpac (optional to run phase-amplitude analysis)

• fooof (optional to run parametrization of power spectra)

Status

License

The project is licensed under the GPLv3 license. Other licenses available upon request.