Skip to main content

Tools for EEG, ECoG, iEEG, especially for sleep

Project description

Package to analysis EEG, ECoG and other electrophysiology formats. It allows for visualization of the results and for a GUI that can be used to score sleep stages.

Features

  • Can read files of format:

    • Axon (.abf, ABF2 only)

    • Blackrock (.nev, .ns2, .ns3, .ns5)

    • BCI2000 (.dat)

    • European Data Format (.edf)

    • EGI MFF (.mff)

    • Fieldtrip (.mat)

    • mne FIFF (.fiff)

  • Interface for Sleep Scoring

  • Computes frequency analysis (spectrogram), time-frequency analysis (Morlet wavelet)

  • Pure Python

Installation

Install wonambi by running:

pip install wonambi

See Installation for details

If you want to scroll recordings and do some sleep scoring (requires PyQt5)

wonambi

Run it!

From the command line, simply type:

wonambi

To open a dataset directly, add the full path to the file you want to open:

wonambi /home/me/sleep_recordings.edf

Documentation

See Documentation

Change Log

See Change Log

Requirements

  • Python 3.6

  • numpy

  • scipy

Optional Requirements

  • PyQt5 (optional for sleep scoring GUI)

  • nibabel (optional to read freesurfer)

  • h5py (optional to read FieldTrip Matlab files)

Status

https://travis-ci.org/wonambi-python/wonambi.svg?branch=master https://codecov.io/gh/wonambi-python/wonambi/branch/master/graph/badge.svg

License

The project is licensed under the GPLv3 license. Other licenses available upon request.

Project details


Release history Release notifications | RSS feed

This version

5.7

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

wonambi-5.7.tar.gz (296.4 kB view hashes)

Uploaded Source

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page