Workflow Python Manager for Reproducible Science
WopMars is a database-driven workflow manager written in python similar to GNU Makefile or Snakemake. The difference is that the definition file of WopMars takes into account input/output SQLITE table defined as python paths to SQLAlchemy models.
You can install the latest WopMars version via “pypi”:
pip install wopmars
Run a quick example:
wopmars example cd example pip install -e . wopmars -D sqlite:///db.sqlite -w Wopfile.yml -v
If there were not errors, you can look at the content of the sqlite db.
$ sqlite3 db.sqlite '.tables' Piece wom_TableInputOutputInformation PieceCar wom_TableModificationTime wom_Execution wom_ToolWrapper wom_FileInputOutputInformation wom_TypeInputOrOutput wom_Option $ sqlite3 db.sqlite "select * from Piece limit 5" 1|UC8T9P7D0F|wheel|664.24 2|2BPN653B9D|engine|550.49 3|T808AHY3DS|engine|672.09 4|977FPG7QJZ|bodywork|667.23 5|KJ6WPB3N56|engine|678.83
The WopMars documentation with user guide and API reference is hosted at Read The Docs.
Release history Release notifications | RSS feed
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
wopmars-0.1.5.tar.gz (68.0 kB view hashes)