Workflow Python Manager for Reproducible Science
WopMars: A database-driven workflow manager
WopMars is a database-driven workflow manager written in python similar to GNU Makefile or Snakemake. The originality of WopMars is that it is closely connected to a relational database and can take database tables as inputs and outputs in the definition file. WopMars uses SQLAlchemy object relational mapper (ORM) and has been currently tested with SQLite, MariaDB/MySQL and PostgreSQL.
To install wopmars, you have to get the sources on the git repository and then go to the source directory and type:
pip install .
To install wopmars with the –dot option to generate workflow schemes:
pip install .[pygraphviz]
The WopMars documentation with user guide and API reference is hosted at Read The Docs.